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PROBIC
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mSWEEP
mSWEEP High-resolution sweep metagenomics using fast probabilistic inference
MIT License
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Initialize pointers (fixes issue #37)
#38
jnalanko
closed
3 days ago
1
--read-likelihood crashes
#37
jnalanko
closed
3 days ago
4
[CI] Automatically publishing new release is broken
#36
tmaklin
opened
1 month ago
0
Remove remaining mpi code
#35
tmaklin
closed
1 month ago
0
Add GPU accelerated abundance estimation
#34
tmaklin
closed
1 month ago
0
Bump actions/download-artifact from 2 to 4.1.7
#33
tmaklin
closed
1 month ago
0
Add GPU support branch
#32
tmaklin
closed
2 months ago
0
Refactor input reading
#31
tmaklin
closed
2 months ago
0
Parallelism & CI fixes
#30
tmaklin
closed
2 months ago
0
Optimizing mSWEEP runs on large datasets
#29
EnriqueDoster
closed
2 months ago
3
Update binary links in readme
#28
tmaklin
closed
4 months ago
0
mSWEEP v2.1.0
#27
tmaklin
closed
4 months ago
0
Add macOS-arm64 and macOS-x86_64 prebuilt binaries.
#26
tmaklin
closed
10 months ago
0
Automatically determine `--tol` to avoid numerical stability derived convergence issues on large input
#25
tmaklin
closed
4 months ago
0
Reading plaintext alignments consumes a lot of memory (workaround inside)
#24
tmaklin
closed
4 months ago
4
mSWEEP v2.0.0
#23
tmaklin
closed
1 year ago
0
Add conda installation
#22
tmaklin
closed
1 year ago
0
Feature request: report the fraction of unassigned reads
#21
jnalanko
closed
1 year ago
1
segmentation fault / persistent memory issues during build log likelihood array
#20
clb21565
closed
1 year ago
13
Fix build issues by fixing cxxio version
#19
tmaklin
closed
1 year ago
0
mSWEEP-v1.6.2 (12 August 2022)
#18
tmaklin
closed
2 years ago
0
mSWEEP-v1.6.1 (5 May 2022)
#17
tmaklin
closed
2 years ago
0
Support Themisto v2.0.0 and newer
#16
tmaklin
closed
2 years ago
0
mSWEEP-v1.5.1 (9 November 2021)
#15
tmaklin
closed
2 years ago
0
mSWEEP v1.5.0 (15 October 2021)
#14
tmaklin
closed
3 years ago
0
Testing mSweep on C.jejuni data, questions for constructing a reference set
#13
mherold1
closed
2 years ago
3
Add option to read in a precomputed likelihood matrix
#12
tmaklin
closed
2 years ago
2
Add options to extract the mSWEEP likelihood matrix and to skip the abundance estimation part
#11
tmaklin
closed
3 years ago
0
Remove extra line from output when running in bootstrap mode (fixes #6).
#10
tmaklin
closed
3 years ago
0
question about parameters for poppunk
#9
smb20200615
closed
3 years ago
2
Create a conda recipe for easy installation
#8
tmaklin
closed
1 year ago
1
Add option to supply multiple clusterings for the same run
#7
tmaklin
closed
3 years ago
1
Using the bootstrapping option (--iters) adds an extra line to the output abundances file
#6
tmaklin
closed
3 years ago
0
mSWEEP-v1.4.0 (10 March 2020)
#5
tmaklin
closed
4 years ago
0
Group indicators are not validated with Themisto input
#4
tmaklin
closed
4 years ago
0
Installation problems
#3
harry-thorpe
closed
5 years ago
2
Kallisto reference index for multi-contig assemblies
#2
aweimann
closed
5 years ago
1
make fails
#1
aweimann
closed
6 years ago
3