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PharmGKB
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PharmCAT
The Pharmacogenomic Clinical Annotation Tool
Mozilla Public License 2.0
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confused by rs4124874 and rs12777823 variants
#47
mathob
closed
3 years ago
3
Issue with rs746071566 variant representation formats in the source database
#46
BinglanLi
opened
3 years ago
0
VCFParser raised an error for VCFs with more than GT format fields
#45
BinglanLi
closed
3 years ago
3
Error when providing path to directory containing allele definitions
#44
kvergy
closed
1 year ago
1
DPYD Reference/variant calls
#43
katrinsangkuhl
closed
3 years ago
1
IFNL3/ peginterferon alfa-2a peginterferon alfa-2b ribavirin
#42
katrinsangkuhl
closed
3 years ago
5
cftr.inc_inc report
#41
katrinsangkuhl
closed
3 years ago
4
Switch from PharmGKB to CPIC for supporting data
#40
whaleyr
closed
3 years ago
3
Further modularize PharmCAT functions
#39
whaleyr
closed
3 years ago
1
Handle "Allele Status" genes in the Reporter
#38
whaleyr
closed
1 year ago
2
Update UGT1A1 handling
#37
whaleyr
closed
3 years ago
2
CYP2C19_translation.json has mismatching .variants[] and .variantAlleles[] lengths
#36
atfrase
closed
3 years ago
2
Erroneous Ref allele in the
#35
BinglanLi
closed
3 years ago
3
Faulty lines in pgx.vcf
#34
siimsober
closed
3 years ago
1
Creating pgx.vcf file - biodas not found
#33
tizatt
closed
4 years ago
1
java.net.UnknownHostException: www.biodas.org
#32
muzic194
closed
4 years ago
1
rs12777823 always appears as missing
#31
rtobes
closed
4 years ago
2
Function mismatch for CYP2D6 *1 > Normal Function != null while running analysis
#30
NTNguyen13
closed
1 year ago
6
Allele functions in CYP3A5 do not correspond to dosing guidelines when API is used
#29
kokyriakidis
closed
4 years ago
1
GRCh37 support
#28
seru71
opened
4 years ago
3
GenePhenotype.java NullPointerException
#27
a113n
closed
3 years ago
4
assembly missing, all variants ignored
#26
martiliasf
closed
4 years ago
1
CPIC query via PharmGKB API
#25
kokyriakidis
closed
5 years ago
1
Build failure
#24
ianzavitz
closed
5 years ago
2
Update CYP3A5 definition
#23
whaleyr
closed
5 years ago
1
Java error reported when testing against 1000 Genomes VCF
#22
rhdolin
closed
3 years ago
1
Add parameter so that wild type positions don't need to included in the VCF
#21
rhdolin
closed
5 years ago
3
Problem running pharmcat-0.6.0-all.jar (BUG?)
#20
CarlosGAH
closed
5 years ago
1
Update CYP2C9 & CYP2C19 definitions
#19
whaleyr
closed
4 years ago
1
Missing genotypes-drugs data in JSON report
#18
atfrase
closed
6 years ago
5
FHIR support
#17
whaleyr
opened
6 years ago
3
Broken match for CYP2C19*2/*35
#16
whaleyr
closed
6 years ago
1
Update flowchart
#15
whaleyr
closed
6 years ago
2
PGx VCF output missing information in latest versions
#14
alavertu
closed
6 years ago
2
cannot update data
#13
chadapohn
closed
6 years ago
1
Exception Error
#12
bio-bench
closed
6 years ago
1
Update json
#11
lester-pharmgkb
closed
7 years ago
1
all positions "missing"
#10
mutundis
closed
7 years ago
6
Can you add example input vcf and expected output for testing
#9
gpcr
closed
8 years ago
3
How to use this tool?
#8
gpcr
closed
6 years ago
10
update exceptions data
#7
whaleyr
closed
6 years ago
0
add notes about called haplotypes using incomplete data
#6
whaleyr
closed
6 years ago
0
add haplotypes that couldn't be called to report
#5
whaleyr
closed
6 years ago
0
highlight differing alleles in gene call report
#4
whaleyr
closed
6 years ago
1
Include cpic-data resource files
#3
whaleyr
closed
8 years ago
1
cyp2c19s2s3 HaplotyperTest fails
#2
lester-pharmgkb
closed
8 years ago
1
Generation of test vcfs by allele processor
#1
lester-pharmgkb
closed
3 years ago
5
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