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RGLab
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QUALIFIER
Qualitiy control for gated flow cytometry data
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FCS_File_mapping.csv
#51
baj12
opened
4 years ago
3
Problem taking in metadata file whose column "name" contains fcs file with spaces
#50
JauntyJJS
opened
8 years ago
0
Error occur when running example dataset (Error in outlierfunc$args)
#49
JauntyJJS
opened
8 years ago
1
Not all ID found in meta data of this GatingSet
#48
JauntyJJS
closed
8 years ago
10
put svg output as enhanced feature so that it can be built on windows
#47
mikejiang
closed
10 years ago
0
popup onclick in svg output
#46
mikejiang
opened
10 years ago
9
show strips on both top and side
#45
mikejiang
opened
10 years ago
5
customize date format when parsing date columns
#44
mikejiang
closed
10 years ago
0
XML::replaceNodes crashes R
#43
mikejiang
closed
10 years ago
2
save_db/load_db
#42
mikejiang
closed
10 years ago
0
replace read.csv with fread
#41
mikejiang
closed
10 years ago
2
A check is in order in the .getQAStats.gh method, when 'pops' filtering results in an empty set of population nodes to process
#40
ldash
closed
10 years ago
2
Modify the format of the 'csv' input file with the QA tasks
#39
ldash
closed
10 years ago
1
convert current Rd doc to roxygen using Rd2roxygen
#38
mikejiang
closed
11 years ago
1
apply ggplot2like theme to QA plots
#37
mikejiang
closed
11 years ago
0
redefine the nodeType for qa definition
#36
mikejiang
closed
11 years ago
2
add pop indices to getQAStats to specify population of interests
#35
mikejiang
closed
11 years ago
0
latest R revision breaks qaCheck
#34
mikejiang
closed
11 years ago
1
The vignette doesn't build. Gives an error on chunk 9
#33
gfinak
closed
11 years ago
1
There is a bug in .queryStats when isTerminal=TRUE and fixed=TRUE
#32
gfinak
closed
11 years ago
0
validity check for the study variable names in formula
#31
mikejiang
opened
11 years ago
0
Issue with annotation data columns containing non-standard characters ...
#30
ldash
closed
11 years ago
2
When qaPreprocess() call is made without the metaFile argument, then the existing annotation data in the gating set gets overwritten
#29
ldash
closed
11 years ago
0
queryStats expects tube column
#28
mikejiang
closed
11 years ago
2
boolean gate not supported by getQAStats
#27
mikejiang
closed
11 years ago
0
integration with labkey
#26
mikejiang
closed
11 years ago
3
the data format for the expected total number of events
#25
mikejiang
closed
10 years ago
0
extend the current population stats extraction API:getQAStats
#24
mikejiang
closed
10 years ago
1
Client side issue with displaying outliers in the pdf vignette file
#23
ldash
opened
12 years ago
0
abstract DB-CRUD layer
#22
mikejiang
opened
12 years ago
0
Error while creating a GatingSet: can it be reproduced by others?
#21
ldash
closed
12 years ago
3
pass lattice graphic settings to qaPlot
#20
mikejiang
closed
12 years ago
0
speed issue of getQAStats
#19
mikejiang
closed
12 years ago
0
document the change for issue #11 and #12
#18
mikejiang
closed
12 years ago
0
address the errors in new created html report
#17
mikejiang
closed
12 years ago
0
merge qa.GroupPlot and qa.singlePlot
#16
mikejiang
closed
12 years ago
0
ITN comments 5: add summary table of FCS that failed different QA checks
#15
mikejiang
closed
12 years ago
0
ITN comments 4: Sufficient RBC lysis
#14
mikejiang
closed
12 years ago
0
ITN comments 3: Off-scale Boundary Events
#13
mikejiang
closed
12 years ago
6
ITN comments 2: add option to control the individual scatter plot
#12
mikejiang
closed
12 years ago
1
ITN comments 1: Fluorescence stability over time
#11
mikejiang
closed
12 years ago
0
add multiple Gating Sets and the actual database support
#10
mikejiang
closed
12 years ago
0
add methods for non-QA type plot
#9
mikejiang
opened
12 years ago
0
formula parsing issue
#8
mikejiang
opened
12 years ago
0
add argument to control the display of gating path
#7
mikejiang
opened
12 years ago
0
change the capital "S" in Subset argument
#6
mikejiang
closed
12 years ago
0
test and check the package for submission
#5
mikejiang
closed
12 years ago
0
speed issue of getQAStat
#4
mikejiang
opened
12 years ago
3
empty panel in redundant staining plot
#3
mikejiang
closed
12 years ago
0
a more generic way to specify population on which QA is to be done
#2
mikejiang
closed
12 years ago
1
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