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RTXteam
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RTX
Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)
https://arax.ncats.io/
MIT License
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Generate a complete weight table for different KPs used in ARAX for improving ranking algorithm
#2338
chunyuma
opened
2 months ago
0
Solving TRAPI 1.5.0 critical and error level validation errors.
#2337
mohsenht
closed
2 months ago
0
Has NodeSynonymizer become very slow?
#2336
edeutsch
closed
1 month ago
5
Issue2299
#2335
chunyuma
closed
1 month ago
1
Should we completely trust `infores:drugcentral`?
#2334
chunyuma
closed
1 month ago
23
Deploy the new faster version of Pathfinder using pre-computed ngds.
#2333
mohsenht
closed
3 weeks ago
0
Optimize Pathfinder by parallelizing its operations for improved speed.
#2332
mohsenht
closed
1 month ago
0
Implement parallel processing for constructing graphs from paths and retrieving edges from ploverDB.
#2331
mohsenht
closed
1 month ago
0
#2329 Un-refactor xDTD treats
#2330
chunyuma
closed
2 months ago
0
Un-refactor xDTD `treats`
#2329
dkoslicki
closed
2 months ago
5
KG2 suddenly non-responsive to `treats` predicate
#2328
dkoslicki
closed
1 week ago
29
xDTD perhaps not returning results like we want?
#2327
dkoslicki
closed
1 month ago
6
Change output structure of Pathfinder.
#2326
mohsenht
closed
1 month ago
0
Evaluate real-time NGDs calculation with in memory database.
#2325
mohsenht
closed
2 months ago
0
Major Ranker refactor did not move the needle on testing??
#2324
edeutsch
closed
1 month ago
8
Update values.yaml
#2323
pahmadi8740
closed
2 months ago
0
Update values.yaml
#2322
pahmadi8740
closed
2 months ago
1
Update values.yaml
#2321
pahmadi8740
closed
2 months ago
0
Filtering out any results that depend on biolink:applied_to_treat
#2320
sundareswarpullela
closed
2 months ago
4
KG2.10.0c rollout
#2319
amykglen
opened
2 months ago
15
updated values.yaml
#2318
pahmadi8740
closed
2 months ago
0
Return a reasonable error messages when query failed to process.
#2317
mohsenht
closed
1 week ago
0
Add a node category constraint to the Path Finder query to ensure paths include at least one node with the selected category.
#2316
mohsenht
closed
1 month ago
0
Use DrugBank test data as a benchmark to evaluate Path Finder.
#2315
mohsenht
opened
2 months ago
1
Update general_concepts.json
#2314
dkoslicki
closed
2 months ago
0
Default API examples don't work
#2313
dkoslicki
opened
2 months ago
2
Improve the ranking algorithm
#2312
chunyuma
closed
2 months ago
0
Develop a script to build a NGD Database
#2311
mohsenht
closed
1 month ago
4
Curie PMID db to Redis
#2310
mohsenht
closed
2 months ago
0
Investigate hosting downloadable RTX-KG2c graph in KG-Hub
#2309
saramsey
opened
2 months ago
0
Path Finder Progress
#2308
mfl15
closed
2 months ago
0
test
#2307
mfl15
closed
2 months ago
0
RTX-KG2 version query no longer works - bug in remove_general_concept_nodes
#2306
amykglen
closed
2 months ago
5
Query the KG2c version by entering this TRAPI query JSON into the browser UI: `{"nodes": {"n00": {"ids": ["RTX:KG2c"]}}, "edges": {}}` (it should return 1 result and the name of that node gives the KG2c version that is installed in the PloverDB that is being queried by the endpoint)
#2305
sundareswarpullela
closed
2 months ago
1
Remove RTXFeedback
#2304
edeutsch
opened
2 months ago
0
Harmful Results in ARAX Query "What Causes Autism?"
#2303
ecwood
closed
4 days ago
6
Gather examples and write a few test cases for ranker evaluation
#2302
chunyuma
closed
2 months ago
1
Add a function in ranker to give higher weight based on the number of edges
#2301
chunyuma
closed
2 months ago
0
Adjust weights in the ranker
#2300
chunyuma
closed
2 months ago
19
Improve ARAX's ranking algorithm
#2299
chunyuma
closed
1 month ago
3
return xCRG Paths through Transcription Factors
#2298
kvnthomas98
closed
1 month ago
0
Path Finder Progress
#2297
mohsenht
closed
2 months ago
1
Add Antidepressive Agents to blocklist
#2296
dkoslicki
closed
2 months ago
1
Changelog since 2024-06-21 deployment to TEST (Fugu)
#2295
edeutsch
closed
1 month ago
2
Changelog since 2024-05-03 deployment to TEST (Eel)
#2294
edeutsch
closed
3 months ago
5
Bump urllib3 from 1.26.18 to 1.26.19
#2293
dependabot[bot]
closed
4 days ago
0
Bump scikit-learn from 1.1.2 to 1.5.0
#2292
dependabot[bot]
closed
4 days ago
0
prepare arax.ncats.io for eventual decommissioning, after arax2.rtx.ai is ready
#2291
saramsey
opened
3 months ago
0
should we update ARAX and KG2 to run on Python 3.10?
#2290
saramsey
opened
3 months ago
0
clean out old/unneeded files in /translator on arax.ncats.io
#2289
saramsey
closed
3 months ago
0
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