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RamsinghLab
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arkas
This is the kallisto package
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SummarizedExperiment Inheritance issue
#45
arcolombo
closed
7 years ago
10
BiocCheck: REQUIRED count: 1 RECOMMENDED count: 1 CONSIDERATION count:6
#44
ttriche
opened
8 years ago
1
exporting pData from kexp-methods allows downstream packages to use
#43
arcolombo
closed
8 years ago
0
arkas::rowRanges is not compatible with GenomicFeatures::rowRanges
#42
arcolombo
closed
8 years ago
3
1 NOTE ; resolving 3 NOTES previously, and pData replacement method
#41
arcolombo
closed
8 years ago
2
support MicroArray SRA data : enhancement
#40
arcolombo
closed
8 years ago
1
Solve Warnings. 0 Warnings and 5 notes
#39
arcolombo
closed
8 years ago
0
committing cleanup changes & coercions
#38
ttriche
closed
8 years ago
7
alias for covariates and features
#37
arcolombo
closed
8 years ago
7
R CMD check checking for missing documentation entries warning
#36
arcolombo
closed
8 years ago
0
R CMD Checks reduced to 7 warnings (this PR solved 2 warnings)
#35
arcolombo
closed
8 years ago
5
R CMD check Rd \usage sections warnings
#34
arcolombo
closed
8 years ago
0
R CMD check code/documentation mismatches
#33
arcolombo
closed
8 years ago
0
R CMD check 'checking replacement functions warning
#32
arcolombo
closed
8 years ago
0
add coercions
#31
ttriche
closed
8 years ago
8
R CMD check KallistoExperiment-Methods 'features'
#30
arcolombo
closed
8 years ago
2
CMD check S3 generic/method consistency
#29
arcolombo
closed
8 years ago
4
R CMD Check checking dependencies in R code
#28
arcolombo
closed
8 years ago
13
updating the vignettes to be html_vig not html_doc
#27
arcolombo
closed
8 years ago
0
crossModels importing resolution
#26
arcolombo
closed
8 years ago
0
after succeeeding with arcolombo PR with TRAVIS patch, and merging to…
#25
arcolombo
closed
8 years ago
0
fixing travis, updating the vignette
#24
arcolombo
closed
8 years ago
0
sraFastqheader conversion enhancement
#23
arcolombo
opened
8 years ago
0
R CMD check suggests HDF5Array
#22
arcolombo
closed
8 years ago
1
prep CMD checks
#21
arcolombo
closed
8 years ago
1
sraFastq and basespace uploading
#20
arcolombo
closed
8 years ago
2
sra header converti for missing run IDS
#19
arcolombo
closed
8 years ago
5
fix travis
#18
arcolombo
closed
8 years ago
2
calcTPM must match tsv file
#17
arcolombo
closed
8 years ago
9
fixes to avoid summarizing bootstraps by default & tidy up some docs
#16
ttriche
closed
8 years ago
0
TRAVIS : Error with Fasta File names in ArkasData.
#15
arcolombo
closed
8 years ago
0
fixes for (some) R CMD check flagged problems
#14
ttriche
closed
8 years ago
0
ruvNormalizaiton, fastq uploading
#13
arcolombo
closed
8 years ago
0
expand unit tests and automate unit testing
#12
arcolombo
closed
8 years ago
1
fit repeats, and flexible FDR input
#11
arcolombo
closed
8 years ago
2
changing arkas travis to point to DOI arkas ...
#10
arcolombo
closed
8 years ago
1
safe exit
#9
arcolombo
closed
8 years ago
2
fastqUploading, basespace CLI, and advaita
#8
arcolombo
closed
8 years ago
5
travis geneWiseAnalysis rowRanges
#7
arcolombo
closed
8 years ago
2
fix RUV normalization to work right by default
#6
ttriche
closed
8 years ago
0
support for arbitrary transcriptomes in mergeKallisto()
#5
ttriche
closed
8 years ago
1
Robustify annotateFeatures and prep annotateReactome, annotateHugo merges
#4
ttriche
closed
8 years ago
2
Ruv normalization support and transcipt analysis
#3
arcolombo
closed
8 years ago
5
Annotate Features erroring out on Kexp
#2
arcolombo
closed
8 years ago
7
Arkas DOI points to Artemis
#1
arcolombo
closed
8 years ago
3