RangeShifter RScore issues

RangeShifter / RScore

RangeShifter's core simulation code

GNU General Public License v3.0

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Merging new genetics into translocation

#63 JetteReeg opened 1 day ago
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Bugfix RangeShiftR/terra

#62 JetteReeg closed 1 week ago
1
Bug with RangeShiftR/terra

#61 JetteReeg closed 1 week ago
1
compare branches

#27 TheoPannetier closed 1 month ago
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Write dominance coefficients to output

#60 TheoPannetier opened 1 month ago
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Should GeneticFitness mutations be cumulative?

#59 TheoPannetier closed 3 weeks ago
1
Enabling pleiotropy

#58 TheoPannetier opened 1 month ago
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Neutral allele frequencies conform to a Hardy-Weinberg equilibrium

#57 TheoPannetier opened 1 month ago
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Deleterious allele frequencies conform to Hardy-Weinberg equilibrium

#56 TheoPannetier opened 1 month ago
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The number of offspring who emigrate is proportional to the mutation rate

#55 TheoPannetier opened 1 month ago
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The nb of unviable offspring is proportional to the mutation rate

#54 TheoPannetier opened 1 month ago
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The correct number of individuals are sampled

#53 TheoPannetier opened 1 month ago
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The correct number of patches is sampled

#49 TheoPannetier opened 1 month ago
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If there is only one sampled population, its self-pairwise Fst equals the global Fst

#50 TheoPannetier opened 1 month ago
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If there is only one locus, the per-locus Fst equals the global Fst

#51 TheoPannetier opened 1 month ago
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The Fst calculations are correct

#41 TheoPannetier opened 1 month ago
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Ploidy doesn't affect the Fst other than through heterozygosity

#42 TheoPannetier opened 1 month ago
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If two sampled pops have the same alleles in the same frequencies, Fst is 1

#43 TheoPannetier opened 1 month ago
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If two sampled pops have zero allele in common, Fst is 1

#44 TheoPannetier opened 1 month ago
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If a sample contains zero individuals or population, its Fst is zero

#45 TheoPannetier opened 1 month ago
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In haploid settings, Ho is always zero

#46 TheoPannetier closed 3 weeks ago
1
If every individual in a sample is homozygote, Ho is zero

#47 TheoPannetier opened 1 month ago
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If an allele is largely more dominant than its homologue, only this allele expresses

#48 TheoPannetier closed 1 week ago
1
If the GeneticFitness phenotype is 0, individual always survives

#40 TheoPannetier closed 1 week ago
1
If the genetic fitness phenotype is 1, individual always dies

#39 TheoPannetier closed 1 week ago
1
Mutations are sampled in the correct distribution

#38 TheoPannetier closed 17 hours ago
1
Individuals inherit alleles from their parents

#37 TheoPannetier closed 3 weeks ago
1
If a trait is not evolvable, the individual uses the species value

#36 TheoPannetier closed 1 week ago
1
Sex-dependent traits use the parameters for the correct sex

#35 TheoPannetier closed 1 week ago
1
Dispersal trait phenotypes always take valid values for the trait

#34 TheoPannetier closed 1 day ago
2
The dominance coefficient of a genetic fitness trait cannot be negative

#33 TheoPannetier closed 2 days ago
2
The phenotype of each genetic fitness trait is bound between 0 and 1

#32 TheoPannetier closed 5 days ago
1
The mutation of a genetic fitness trait cannot exceed -1 or 1

#31 TheoPannetier closed 5 days ago
1
Genetic linkage does occur

#30 TheoPannetier closed 3 weeks ago
1
Two genes using the same position are in complete linkage

#52 TheoPannetier closed 3 weeks ago
1
If the recombination rate is zero, no recombination occurs

#29 TheoPannetier closed 6 days ago
1
If a trait is not inherited, mutations are sampled in initial distribution

#28 TheoPannetier closed 6 days ago
1
add push instructions

#26 TheoPannetier closed 3 months ago
0
Bugfixes from Develop

#25 JetteReeg closed 2 months ago
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Translocation

#24 JetteReeg closed 4 months ago
1
Develop

#23 TheoPannetier closed 5 months ago
0
Merge pull request #21 from RangeShifter/develop

#22 TheoPannetier closed 5 months ago
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Merging develop into development-guidelines

#21 JetteReeg closed 5 months ago
2
Merge changes of cmake_batch branch also into main

#20 JetteReeg closed 5 months ago
0
Add development guidelines

#19 TheoPannetier closed 5 months ago
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added a fix for issue #12 in Landscape.cpp

#18 JetteReeg closed 7 months ago
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RScore has a main to run tests

#17 TheoPannetier closed 5 months ago
1
Add a main to test RScore

#16 TheoPannetier closed 7 months ago
1
Deploy CMake for batch version

#15 TheoPannetier closed 5 months ago
1
Add contributing guidelines

#14 JetteReeg closed 5 months ago
1