RegulatoryGenomicsGroup chicdiff issues

RegulatoryGenomicsGroup / chicdiff

A differential caller for capture Hi-C data

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issues

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Plotting gene names along with bait IDs in plotDiffBaits

#22 RomeroMatt opened 5 months ago
4
Order of test and control entry for fold change interpretation

#21 wilsoner2175 opened 7 months ago
0
Error in argument Type

#20 RomeroMatt closed 7 months ago
12
Significant interaction

#19 FN2023 opened 1 year ago
0
ChicDiff differential loop calling

#18 FN2023 opened 1 year ago
1
How to use plotdiffBaits to show the results of 4 condition

#17 FN2023 opened 1 year ago
5
Can not dowload chicdiff

#16 FN2023 opened 1 year ago
6
Unable to download because of - Error in utils:

#15 vishimenon28 opened 1 year ago
3
multiple designDir for chicdiff?

#14 aturocks opened 1 year ago
4
question about the resulting OE coordinate

#13 baishengjun opened 2 years ago
1
getCandidateInteractions() output interpretation

#12 Mavti opened 2 years ago
1
problem with test dataset

#11 Meowth-3Dchr opened 4 years ago
0
Running IHWcorrection: error

#10 odovgusha opened 4 years ago
2
Error in getFullRegionData

#9 gitgitmonkey opened 4 years ago
2
Which sample is used as a 'treatment'/'control' in ChicDiff pipeline?

#8 AdrijaK closed 4 years ago
2
Semantic problem: interaction-level normalization factor computation

#7 armenabnousi opened 4 years ago
1
plotDiffBaits() error: Aesthetics must be either length 1 or the same as the data (1): colour, x, y

#6 AdrijaK closed 4 years ago
2
Internal error: Failed to allocate counts or TMP when assigning g in gforce

#5 maharshi14 closed 4 years ago
9
ERROR during tutorial

#4 chesi closed 4 years ago
16
Error in running getRegionUniverse

#3 MigleMi opened 5 years ago
3
Installation instructions Query

#2 StevenWingett closed 5 years ago
0
Make the designdir before running

#1 vmalysheva closed 5 years ago
3