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STOmics
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Stereopy
A toolkit of spatial transcriptomic analysis.
MIT License
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Can batches integration be performed in cellbin?
#143
mcraftt
closed
1 year ago
5
How to add metadata to stereopy object
#142
GokceOGUZ
closed
1 year ago
1
ModuleNotFound error when importing cell_seg_v3 from stereo.image
#141
playgamemy
closed
1 year ago
8
General question about SingleR in stereopy
#140
limin321
closed
1 year ago
5
ModuleNotFoundError: No module named 'stereo.algorithm.highly_varialble_genes'
#139
sarahshuang
closed
1 year ago
2
region flag for read_gem
#138
ViHammer
closed
1 year ago
1
cell segmentation tutorial fail to generate the results.
#137
limin321
closed
1 year ago
2
Print result into PDF files
#136
YuxuanZheng94
closed
1 year ago
1
How to obtain raw bin1 x gene count matrix from GEM file?
#135
bmill3r
closed
1 year ago
2
How to subset stereopy object?
#134
GokceOGUZ
closed
1 year ago
4
Spatial Hotspot module information
#133
mcraftt
closed
1 year ago
1
Co-occurrence
#132
caolei2-BGI
closed
1 year ago
0
Spatially constrained clustering (SCC)
#131
tvegawaichman
closed
1 year ago
2
Cell community detection
#130
vladimirkovacevic
closed
1 year ago
2
Work
#129
tanliwei-coder
closed
1 year ago
0
udpate CCC/GRN page; update examples; enable jupyter notebook embeding;
#128
cchd0001
closed
1 year ago
1
Work
#127
tanliwei-coder
closed
1 year ago
0
SpatialFeaturePlot() fails to generate the plot of Seurat object converted from Stereopy h5ad
#126
limin321
closed
11 months ago
12
Algorithm
#125
YaoLi3
closed
1 year ago
0
How to set plotting functions basic formatting arguments?
#124
vdet
closed
1 year ago
2
Install hangs failing to collect package metadata
#123
vdet
closed
9 months ago
16
kernel keep dying while reading stereoseq gef file
#122
raman91
closed
1 year ago
3
Conversion of GEM and GEF file formats
#121
Taoli0113
closed
1 year ago
3
ins.export_high_res_area stuck issue
#120
mcraftt
closed
1 year ago
11
Reading in custom .h5ad file, issues with adata.obsm['spatial'] - `ValueError: Unfamiliar encoding-type: dict.`
#119
mckellardw
closed
1 year ago
5
plt.marker_genes_scatter cannot plot using scaled data
#118
ZeroLi-Bio
closed
1 year ago
4
How to draw nGene on umap
#117
ZeroLi-Bio
closed
1 year ago
2
add vt3d_browser
#116
cchd0001
closed
1 year ago
0
Version release date error
#115
DMaspero
closed
1 year ago
1
How to draw the ssDNA image?
#114
vagabond12
closed
1 year ago
2
Lyon len patch 1
#113
LyonLen
closed
1 year ago
0
Homepage modification
#112
UglyRay7
closed
1 year ago
0
Homepage modification
#111
UglyRay7
closed
1 year ago
0
First commit
#110
Tianyi-Summer
closed
1 year ago
2
Add time_series_analysis.py contains fuzzyC, TVG and spatial trajectory visualization for time series multi slice
#109
caolei2-BGI
closed
1 year ago
1
3D CCC Algorithm
#108
Melonnaire
closed
1 year ago
1
交互式不起作用
#107
lvmt
closed
1 year ago
4
CellCut.cell_cut not working
#106
crelicthecleric
closed
1 year ago
4
marker gene plot
#105
xiangyugits
closed
1 year ago
2
data_helper.merge merge slices
#104
JingGuo1997
closed
1 year ago
2
Not able to use stereopy after installation
#103
pratapstat
closed
1 year ago
8
error: cgef to h5ad
#102
zt6597
closed
1 year ago
2
Cell Segmentation问题，tissue cut有遗漏以及 有多余的细胞被分割出来
#101
easyc1
closed
1 year ago
2
ZeroDivisionError data.tl.find_marker_genes
#100
ChangqingW
closed
1 year ago
2
GRN module, Algorithm
#99
YaoLi3
closed
1 year ago
1
cell correct error
#98
zt6597
closed
1 year ago
9
Error in data.tl.leiden
#97
lh12565
closed
1 year ago
4
About cell correction
#96
SuqinYang
closed
1 year ago
1
Image feature Module V0.1
#95
caolei2-BGI
closed
1 year ago
0
Stereopy co-occurrence module V0.1
#94
caolei2-BGI
closed
1 year ago
0
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