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STOmics
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Stereopy
A toolkit of spatial transcriptomic analysis.
MIT License
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How to Integrate Three Biological Replicates within the same slice
#170
iRegene
closed
11 months ago
0
GEF to cGEF file process died
#169
predictowner
closed
11 months ago
5
Updata time-series
#168
caolei2-BGI
closed
9 months ago
0
Looking forward to the early implementation of batch correction algorithm between different slices.
#167
ying1e
closed
11 months ago
4
data.tl.cell_cell_communication can't find the cell comunication database
#166
Feng-Zhang
closed
11 months ago
4
GEM to GEF file
#165
predictowner
closed
11 months ago
3
Work brach - added .obs['cell_communities'] to return data and fixed bugs
#164
mejasmi
closed
11 months ago
0
multi sample test error
#163
m-fayer
closed
11 months ago
5
Zhenbin
#162
Zhenbin24
closed
1 year ago
0
TypeError: base_scatter() got an unexpected keyword argument 'groups'
#161
danammak
closed
11 months ago
1
new paga plot
#160
huluni
closed
11 months ago
1
paga_plot
#159
huluni
closed
1 year ago
0
paga_plot
#158
huluni
closed
1 year ago
0
Extract cellbin assignments of individual DNBs
#157
bmill3r
closed
1 year ago
2
Saving StereoExpData as new GEF exceeds memory requirements
#156
bmill3r
closed
11 months ago
3
Is there a way to subset a StereoExpData by cell (or bin) ID?
#155
bmill3r
closed
1 year ago
1
Work
#154
Zhenbin24
closed
11 months ago
0
module 'stereo.io' has no attribute 'read_h5ad'
#153
Jiayi-Zheng
closed
10 months ago
3
can not create interactive plot and use poly draw
#152
LuyiTian
closed
11 months ago
1
Algorithm
#151
Melonnaire
closed
11 months ago
1
KeyError in single_r
#150
fumi-github
closed
1 year ago
3
annh5ad2rds.R throwing error
#149
GokceOGUZ
closed
1 year ago
3
updata time-series-analysis
#148
caolei2-BGI
closed
11 months ago
0
【Add】add version info
#147
Zhenbin24
closed
1 year ago
0
Error: Missing required datasets 'levels' and 'values'
#146
mcraftt
closed
1 year ago
1
AttributeError with spatial_hotspot when multiprocess
#145
playgamemy
closed
1 year ago
2
3D reconstruction
#144
vagabond12
closed
1 year ago
1
Can batches integration be performed in cellbin?
#143
mcraftt
closed
1 year ago
5
How to add metadata to stereopy object
#142
GokceOGUZ
closed
1 year ago
1
ModuleNotFound error when importing cell_seg_v3 from stereo.image
#141
playgamemy
closed
1 year ago
8
General question about SingleR in stereopy
#140
limin321
closed
1 year ago
5
ModuleNotFoundError: No module named 'stereo.algorithm.highly_varialble_genes'
#139
sarahshuang
closed
1 year ago
2
region flag for read_gem
#138
ViHammer
closed
1 year ago
1
cell segmentation tutorial fail to generate the results.
#137
limin321
closed
1 year ago
2
Print result into PDF files
#136
YuxuanZheng94
closed
1 year ago
1
How to obtain raw bin1 x gene count matrix from GEM file?
#135
bmill3r
closed
1 year ago
2
How to subset stereopy object?
#134
GokceOGUZ
closed
1 year ago
4
Spatial Hotspot module information
#133
mcraftt
closed
1 year ago
1
Co-occurrence
#132
caolei2-BGI
closed
1 year ago
0
Spatially constrained clustering (SCC)
#131
tvegawaichman
closed
1 year ago
2
Cell community detection
#130
vladimirkovacevic
closed
1 year ago
2
Work
#129
tanliwei-coder
closed
1 year ago
0
udpate CCC/GRN page; update examples; enable jupyter notebook embeding;
#128
cchd0001
closed
1 year ago
1
Work
#127
tanliwei-coder
closed
1 year ago
0
SpatialFeaturePlot() fails to generate the plot of Seurat object converted from Stereopy h5ad
#126
limin321
closed
9 months ago
12
Algorithm
#125
YaoLi3
closed
1 year ago
0
How to set plotting functions basic formatting arguments?
#124
vdet
closed
1 year ago
2
Install hangs failing to collect package metadata
#123
vdet
closed
7 months ago
16
kernel keep dying while reading stereoseq gef file
#122
raman91
closed
1 year ago
3
Conversion of GEM and GEF file formats
#121
Taoli0113
closed
1 year ago
3
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