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STOmics
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Stereopy
A toolkit of spatial transcriptomic analysis.
MIT License
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A rotation function would be quite intriguing?
#204
Li-ZhiD
closed
8 months ago
2
How to download the demo data in the tutorials?
#203
suye0620
closed
8 months ago
2
ValueError: All arrays must be of the same length
#202
Biomamba
closed
8 months ago
1
Unable to reproduce the results in the report through stereopy
#201
AfterDream
closed
9 months ago
0
find_marker_genes throws error using case_groups and control_groups
#200
ChiragNepal
closed
8 months ago
7
ValueError: '_buffers' is not a parameter of PolyEdit08625 in "High Resolution Matrix Export"?
#199
Li-ZhiD
closed
7 months ago
3
data.tl.cell_cell_communication()
#198
Biomamba
closed
8 months ago
3
hotspot.create_modules produces a unknown module: module -1
#197
Sophia409
closed
4 months ago
1
ms_data.integrate AttributeError: 'NoneType' object has no attribute 'shape'
#196
Sophia409
closed
8 months ago
1
No attribute named 'StPipeline.batch_qc' in Batch QC
#195
TaoyuJoshua
closed
8 months ago
7
Add a "Add selected area" button to PolySelect Interactive Spatial Scatter
#194
playgamemy
closed
6 months ago
2
Stereopy installation through Conda error - package python conflict
#193
playgamemy
closed
7 months ago
1
marker_gene_volcano() unable to put text on using `text_genes` argument
#192
playgamemy
closed
9 months ago
1
how many _relationship options in MSData?
#191
Sophia409
closed
8 months ago
1
SingleR HPCA reference dataset - rda2h5ad.R throwing error
#190
GokceOGUZ
closed
7 months ago
3
Adding one column metadata into the Stereoseq Object
#189
GokceOGUZ
closed
8 months ago
1
SCTransform v2 implementation?
#188
cnk113
closed
9 months ago
1
MIDCount means?
#187
predictowner
closed
8 months ago
1
About time consume.
#186
Biomamba
closed
8 months ago
1
FileNotFoundError: [Errno 2] No such file or directory: '/home/biomamba/miniconda3/envs/stereopy/lib/python3.8/site-packages/stereopy-0.14.0b1-py3.8.egg/stereo/algorithm/ccd/assets/favicon.ico'
#185
Biomamba
closed
9 months ago
1
AttributeError: No attribute named 'StPipeline.co_occurrence'
#184
Biomamba
closed
9 months ago
2
Where can we find information about the structure of the StereoExpData object?
#183
Li-ZhiD
closed
8 months ago
2
anndata_to_stereo AnnData format conversion
#182
wdb-web
closed
9 months ago
1
data.plt.grn_dotplot() TypeError: unhashable type: 'DataFrame'
#181
Biomamba
closed
9 months ago
4
annh5ad2rds.R Error
#180
suye0620
closed
6 months ago
1
about data.tl.spatial_hotspot
#179
Biomamba
closed
9 months ago
2
ValueError: 4 columns passed, passed data had 8 columns
#178
Biomamba
closed
6 months ago
5
how to subset slice?
#177
MariaRosariaNucera
closed
7 months ago
3
More samples within the same slice
#176
MariaRosariaNucera
closed
4 months ago
3
Is there a way to calculate variance for PCA analysis and elbow plot in Stereopy?
#175
danammak
closed
9 months ago
1
AttributeError: 'MSData' object has no attribute 'integrate'
#174
Biomamba
closed
9 months ago
1
AnnDataReadError: Above error raised while reading key '/layers' of type <class 'h5py._hl.group.Group'> from /.
#173
Biomamba
closed
10 months ago
3
AttributeError: 'numpy.ndarray' object has no attribute 'toarray' while data.tl.cell_cell_communication
#172
THZ34
closed
9 months ago
3
How to Integrate Three Biological Replicates within the same slice
#171
jmzhang1911
closed
9 months ago
3
How to Integrate Three Biological Replicates within the same slice
#170
iRegene
closed
10 months ago
0
GEF to cGEF file process died
#169
predictowner
closed
9 months ago
5
Updata time-series
#168
caolei2-BGI
closed
7 months ago
0
Looking forward to the early implementation of batch correction algorithm between different slices.
#167
ying1e
closed
9 months ago
4
data.tl.cell_cell_communication can't find the cell comunication database
#166
Feng-Zhang
closed
10 months ago
4
GEM to GEF file
#165
predictowner
closed
10 months ago
3
Work brach - added .obs['cell_communities'] to return data and fixed bugs
#164
mejasmi
closed
10 months ago
0
multi sample test error
#163
m-fayer
closed
10 months ago
5
Zhenbin
#162
Zhenbin24
closed
10 months ago
0
TypeError: base_scatter() got an unexpected keyword argument 'groups'
#161
danammak
closed
10 months ago
1
new paga plot
#160
huluni
closed
10 months ago
1
paga_plot
#159
huluni
closed
11 months ago
0
paga_plot
#158
huluni
closed
11 months ago
0
Extract cellbin assignments of individual DNBs
#157
bmill3r
closed
10 months ago
2
Saving StereoExpData as new GEF exceeds memory requirements
#156
bmill3r
closed
10 months ago
3
Is there a way to subset a StereoExpData by cell (or bin) ID?
#155
bmill3r
closed
10 months ago
1
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