SWC-Advanced-Microscopy measurePSF issues

SWC-Advanced-Microscopy / measurePSF

Measure PSF FWHM along different axes

GNU Lesser General Public License v3.0

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issues

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Disable bidi for PSFs?

#73 raacampbell opened 4 months ago
0
Need to copy microscope settings files to data directories

#72 raacampbell opened 4 months ago
1
Failing to find `snakeyaml` in this repo so can't load settings

#71 raacampbell closed 4 months ago
1
Updates for issue #68- creating new function to make recording functions uniform in how they work

#70 iwhiteley closed 4 months ago
3
minor change to readme

#69 iwhiteley closed 4 months ago
1
Create variable input prompts in record.PSF

#68 iwhiteley closed 4 months ago
2
Can standard light source data go into one file?

#67 raacampbell closed 4 months ago
1
Output stats from plot/analysis functions

#66 raacampbell opened 5 months ago
0
Make sure the report generation works as expected and update the readme to describe it

#65 raacampbell closed 1 year ago
0
Are we plotting var or SD in gain plots?

#64 raacampbell closed 1 year ago
1
Consider getting rid of the requirement for the image processing toolbox

#63 raacampbell opened 2 years ago
0
get rid of parallel computing requirement in load 2D tiff

#62 raacampbell closed 1 year ago
1
ScanImage state not returned to previous settings after running lens paper

#61 raacampbell opened 2 years ago
1
electrical noise should only turn off existing PMTs

#60 raacampbell closed 5 months ago
1
recordPSF fails to work with ScanImage Basic 2021

#59 raacampbell opened 3 years ago
0
Grid measure tool does not pull in average image

#58 raacampbell closed 3 years ago
1
recordPSF should only run with one channel enabled for saving

#57 raacampbell closed 4 months ago
1
Polish labels in measurePSF

#56 raacampbell opened 4 years ago
0
Add option to use slow-z device to recordPSF

#55 raacampbell opened 4 years ago
0
Axis numbers along the ZY and ZX plots seem wrong

#54 raacampbell opened 4 years ago
1
Add a 1 micron X/Y scale bar with a label

#53 raacampbell opened 4 years ago
0
Labels missing or need modifying in measurePSF

#52 raacampbell closed 4 years ago
6
Label axes in grid plot

#51 raacampbell opened 4 years ago
0
Contour plot of fluorescent slide

#50 raacampbell opened 4 years ago
0
recordPSF save date is not correct

#49 raacampbell closed 4 years ago
1
fname not made correctly in measurePSF.m

#48 raacampbell closed 4 years ago
3
recordPSF fails if PC username contains a hyphen

#47 raacampbell opened 4 years ago
1
In R2019b the top right plot does not expand when the user zooms

#46 raacampbell closed 4 years ago
1
Add a URL to the repo in each saved image

#45 raacampbell opened 4 years ago
0
Ensure pixels in XY and YZ projections are square

#44 raacampbell opened 4 years ago
1
Add legends to measurePSF

#43 raacampbell closed 4 years ago
1
Label the plots more clearly in measurePSF

#42 raacampbell closed 4 years ago
1
Axial PSF isn't calculated along the axis of the PSF

#41 raacampbell opened 4 years ago
0
Confirm that grid measurement is only needed at one zoom value

#40 raacampbell closed 4 years ago
1
Ensure recordPSF works with coarse Z

#39 raacampbell closed 4 years ago
3
measurePSF lacks x/y FWHM in some circumstances

#38 raacampbell closed 4 years ago
1
Option to set main SI window to have look-up table be jet(10)

#37 raacampbell opened 4 years ago
1
measurePSF would be nice if it could also take stack into fluorcal slide

#36 raacampbell opened 4 years ago
0
grid GUI image top right is not autoscaled nicely

#35 raacampbell opened 4 years ago
0
apply FOV in grid GUI failed on Fred's reso rig

#34 raacampbell closed 4 years ago
1
grid GUI should have a ‘save figure’ button to save pdf of output

#33 raacampbell closed 4 years ago
1
recordPSF saved file name date and time are wrong

#32 raacampbell closed 4 years ago
1
Graphically provide input options to Grid2MicsPerPixel

#31 raacampbell closed 4 years ago
1
Should be able to run measurePSF without input args

#30 raacampbell opened 4 years ago
1
Function to alter a scan axis to achieve a square grid

#29 raacampbell opened 4 years ago
0
Add to Grid measurement window options pull new grid image and set FOV

#28 raacampbell closed 4 years ago
2
Slider motion is quite laggy in measurePSF

#27 raacampbell opened 4 years ago
1
measurePSF should take a file name as an input

#26 raacampbell closed 4 years ago
1
Why do NeuroVision--imaged beads not measure with the tool?

#25 raacampbell closed 4 years ago
1
Add scrolling plot of mean intensity

#24 raacampbell closed 4 years ago
2