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Saskia-Oosterbroek
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decona
fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads
MIT License
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does v1.4 support Mac m chip?
#54
CaiWang0503
opened
1 week ago
0
Fastq files filtered for quality but then no longer found
#53
sjbald
opened
2 weeks ago
2
Issue with medaka
#52
Eefje-Kuijpers
opened
1 month ago
0
bump medaka version supported ?
#51
arielzn
opened
8 months ago
0
Installation on Ubuntu 22.04 not working
#50
dgslos
opened
1 year ago
0
clustering: directory not found
#49
HenkvdMeulen
opened
1 year ago
0
Problems with running decona on example data
#48
JobOudeV
closed
1 year ago
1
issue with medaka
#47
RobertRmendoza
opened
1 year ago
1
Incompatible package versions
#46
lewhiteside
opened
1 year ago
1
Installation
#45
Hanjiewu
opened
1 year ago
5
Issue with Medaka
#44
lewhiteside
opened
1 year ago
0
fatal: division by zero attempted
#43
MMAThijssen
closed
1 year ago
1
Install issues -Conda 4.13.0
#42
SJHelyar
opened
2 years ago
0
Make blast db not working?
#41
ap1438
closed
2 years ago
7
Fix install script for non-cloned repositories
#40
ceesvoesenek
closed
2 years ago
0
Example data error before re-clustering
#39
Statesanalytical
closed
1 year ago
2
Change CD-HIT submodule URL from SSH to HTTPS
#38
ceesvoesenek
closed
2 years ago
0
Is it possible to do analysis without using any reference?
#37
Fika182
opened
2 years ago
2
install issue v1.2 and v1.3
#36
thierryjanssens
closed
1 year ago
6
No Blast output
#35
DeniRibicic
opened
2 years ago
1
Add CD-HIT as a submodule and build/install it in the install script
#34
ceesvoesenek
closed
2 years ago
0
use primer information to rotate sequences?
#33
Kirk3gaard
opened
2 years ago
2
Missing bcftools
#32
Fika182
closed
2 years ago
3
any plans on updating this to work with new medaka versions and models?
#31
Kirk3gaard
opened
2 years ago
2
Reorganise repository, tweak install script
#30
ceesvoesenek
closed
2 years ago
0
Option -T is ignored: multi-threading with OpenMP is NOT enabled!
#28
MMAThijssen
closed
2 years ago
2
rename: not enough arguments
#27
dieunelderilus
opened
2 years ago
6
Failed to run the example dataset
#26
dieunelderilus
opened
2 years ago
3
Reclustering option set but does not happen
#25
thierryjanssens
opened
2 years ago
0
Result only on one barcode
#24
Kata-Pa
closed
2 years ago
1
awk: run time error with combined2.txt
#23
thierryjanssens
closed
2 years ago
3
Pipeline exits due to empty polished.X.fa.fasta file.
#22
thierryjanssens
closed
2 years ago
2
Can't find decona command/ installation issue
#21
juanboja
closed
2 years ago
2
Primer trimming
#20
thierryjanssens
closed
2 years ago
1
conda 4.11.0
#19
thierryjanssens
closed
2 years ago
0
Failed to run Medaka consensus
#16
DrownedMala
closed
2 years ago
0
Using multiple fastq files and getting info on cluster sizes
#15
Saskia-Oosterbroek
closed
2 years ago
2
Install Issue with Conda 4.10.3
#14
natetruelove
closed
2 years ago
0
rename: command not found
#13
OndroV
closed
2 years ago
2
fatal: division by zero attempted
#12
joran520
closed
2 years ago
0
demultiplexing - how to skip or specify
#11
OndroV
closed
3 years ago
3
Install in a Mac using miniconda 4.9.2
#8
ramongallego
closed
2 years ago
5
rename: not enough arguments
#7
leocaserta
closed
2 years ago
4
support for conda 4.9.2?
#5
EWisely
closed
3 years ago
2
Medaka accepts no thead limit
#4
joran520
closed
2 years ago
1