SynBioDex libSBOLj issues

SynBioDex / libSBOLj

Java Library for Synthetic Biology Open Language (SBOL)

Apache License 2.0

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issues

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Sep013 - add sourceLocations to Components

#576 cjmyers closed 5 years ago
0
getImpliedNucleicAcidSequence needs to be sourceLocation aware

#575 cjmyers closed 5 years ago
1
Add an optional set of types to Activity

#574 cjmyers closed 5 years ago
0
Added an optional sequence property to the Location class

#573 cjmyers closed 5 years ago
0
Add sequence to Location object (SEP 026)

#572 cjmyers closed 5 years ago
2
should now return 'null'.

#571 SamuelSauce closed 5 years ago
0
getImpliedNucleicAcid should return null if range is out of bounds.

#570 SamuelSauce closed 5 years ago
1
Problems parsing the LOCUS line in GenBank files

#569 cjmyers closed 5 years ago
1
This branch doesn't include classpath.

#568 SamuelSauce closed 5 years ago
0
Flip sequence

#567 SamuelSauce closed 5 years ago
0
Changed the method Sequence.reverseComplement()

#566 SamuelSauce closed 5 years ago
1
libSBOLj serializes Boolean annotations as strings

#565 jakebeal opened 5 years ago
2
Flipping orientation with an all caps sequence creates N's.

#564 SamuelSauce closed 5 years ago
2
Interaction/Participation only recognize some recommended SBO terms

#563 jakebeal closed 5 years ago
7
Created a new SynBioHubFrontend constructor that takes a timeout.

#562 dsumorok-raytheon closed 6 years ago
0
Problem with fix URI prefixes with overlapping prefix names

#561 cjmyers opened 6 years ago
0
Multiple types for GenericTopLevel getting dropped

#560 cjmyers closed 6 years ago
0
org.synbiohub.frontend.SynBioHubFrontend should include timeouts

#559 jakebeal closed 5 years ago
10
Should have method to print in XML format a specified TopLevel

#558 cjmyers opened 6 years ago
0
Should add methods to count objects and print these counts

#557 cjmyers opened 6 years ago
0
Need better provenance construction helper functions

#556 cjmyers opened 6 years ago
0
Add a method to compile a sequence that satisfies the SequenceConstraints

#555 cjmyers opened 6 years ago
0
Add Support for REGION Tag to GenBank-to-SBOL Conversion

#554 nroehner closed 5 years ago
3
Inverted recursive copy method

#553 cjmyers opened 6 years ago
0
Snapgene detection

#552 3ach closed 6 years ago
0
Parsing of RDF files depends on XML structure

#551 jamesamcl opened 6 years ago
1
Add a flag to validation to indicate missing parts should be fetched from the web-of-registries

#550 cjmyers opened 6 years ago
0
Validation of sbol that uses persistentIdentity references may not work completely

#549 cjmyers opened 6 years ago
0
SequenceConstraints of derived CDs must be consistent with template (sbol-12908)

#548 cjmyers closed 6 years ago
1
Support import/conversion from GFF

#547 cjmyers opened 6 years ago
0
Ncl to org

#546 cjmyers closed 6 years ago
0
StringIndexOutOfBoundsException in SBOLValidate

#545 3ach closed 6 years ago
1
Certificate errors connecting to SynBioHub instances

#544 jakebeal opened 6 years ago
9
SynBioHubFrontend login exposes passwords

#543 jakebeal opened 6 years ago
5
Check format property in Attachment class is from EDAM ontology

#542 cjmyers closed 6 years ago
1
Checking of variable components

#541 cjmyers closed 6 years ago
1
Check if at least one of variants, variantCollections, and variantDerivations is set

#540 cjmyers closed 6 years ago
1
Implement checks for CombinatorialDerivations

#539 cjmyers closed 6 years ago
1
Implement check for best practice rules for design-build-test-learn roles

#538 cjmyers closed 6 years ago
1
Check for circular references in wasGeneratedBy (sbol-10223)

#537 cjmyers closed 6 years ago
1
Update references should update source field in model

#536 cjmyers opened 6 years ago
0
Changed version

#535 cjmyers closed 6 years ago
0
Update docs

#534 cjmyers closed 6 years ago
0
2.3.0 release

#533 cjmyers closed 6 years ago
0
Check all methods in SBOLValidate.validateSBOL to see if support new classes

#532 cjmyers closed 6 years ago
2
Do not serialize empty strings

#531 cjmyers opened 6 years ago
0
Update docs

#530 cjmyers closed 6 years ago
0
Attachment

#529 cjmyers closed 6 years ago
1
Implementation

#528 cjmyers closed 6 years ago
1
createRecursiveCopy needs to follow all links

#527 michael13162 closed 6 years ago
3

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