issues
search
UC-Davis-molecular-computing
/
scadnano-python-package
Python scripting library for generating designs readable by scadnano.
https://scadnano.org
MIT License
13
stars
7
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
make xlwt a dependency for pip installing
#205
dave-doty
closed
2 years ago
0
make tutorial that uses chained methods
#204
dave-doty
opened
2 years ago
0
fix crash error in assignment of DNA to design with deletion on one domain but not other
#203
dave-doty
opened
2 years ago
0
cadnano import should use helices_view_order to preserve the main view ordering of helices as they appear in cadnano
#202
dave-doty
opened
2 years ago
6
closes #200: make scadnano pitch angle agree with oxDNA
#201
DanielHader
closed
2 years ago
1
make scadnano pitch angle agree with oxDNA
#200
dave-doty
closed
2 years ago
0
closes #198: allow oxDNA export when multiple helix groups are present
#199
dave-doty
closed
2 years ago
0
allow oxDNA export when multiple helix groups are present
#198
dave-doty
closed
2 years ago
0
custom SVG position of helices
#197
dave-doty
opened
2 years ago
0
switch to better GitHub action for generating release notes
#196
dave-doty
opened
2 years ago
0
Create pull_request_template.md
#195
UnHumbleBen
closed
2 years ago
1
add option to export .sc file with default values explicitly written
#194
dave-doty
opened
2 years ago
0
Refactor cadnano import/export
#193
UnHumbleBen
closed
2 years ago
1
#186 add unit tests for test assign dna
#192
cesarg707
closed
2 years ago
1
Dev
#191
dave-doty
closed
3 years ago
1
Oxdna export roll angle fix
#190
DanielHader
closed
3 years ago
1
Bug fix helix number was badly set in cadnano export
#189
tcosmo
closed
3 years ago
3
fix Helix.roll translation to nucleotide positions in oxDNA export
#188
dave-doty
closed
3 years ago
0
Dev
#187
dave-doty
closed
3 years ago
0
add unit tests for TestAssignDNA
#186
cesarg707
closed
2 years ago
0
handle paranemic crossovers in cadnano export
#185
dave-doty
closed
3 years ago
3
fix error "must have helix.max_offset set" when exporting cadnano and strand goes all the way to end of helix
#184
dave-doty
opened
3 years ago
0
oxDNA export forward vector fix
#183
DanielHader
closed
3 years ago
0
Dev
#182
dave-doty
closed
3 years ago
0
closes #177; export to IDT plates rebalances strands among last two plates if the last plate has too few strands
#181
dave-doty
closed
3 years ago
0
fix purification/scale typo in to_idt_bulk_input_format
#180
cgevans
closed
3 years ago
0
Dev issue 193 oxdna export
#179
anelisecho
closed
3 years ago
0
Fixes #176; Rewrite doc test
#178
UnHumbleBen
closed
3 years ago
0
export to IDT plates rebalances strands among last two plates if the last plate has too few strands
#177
dave-doty
closed
3 years ago
0
Rewrite doc test
#176
UnHumbleBen
closed
3 years ago
0
v0.16.0
#175
UnHumbleBen
closed
3 years ago
6
add options for sorting plates in export to Excel files
#174
dave-doty
opened
3 years ago
0
export to oxView format
#173
dave-doty
closed
1 year ago
4
Fix Sphinx warning on idt_dna_sequence
#172
UnHumbleBen
closed
3 years ago
0
Encoder indent suppression: str.replace → re.sub (fixes #170)
#171
cgevans
closed
3 years ago
0
add optional parameter suppress_indent to method Design.write_scadnano_file
#170
cgevans
closed
3 years ago
3
Only remove "Grid." from grid if it is there.
#169
dave-doty
closed
3 years ago
2
ensure grid fields are of type Grid, not str or None
#168
cgevans
closed
3 years ago
0
CanDo export
#167
UnHumbleBen
opened
3 years ago
2
Fixes #163; Remove Helix.pitch and Helix.yaw
#166
UnHumbleBen
closed
3 years ago
2
Remove debug print hello in to_idt_bulk_input_format
#165
cgevans
closed
3 years ago
0
remove debug print hello in to_idt_bulk_input_format
#164
cgevans
closed
3 years ago
1
remove Helix.pitch and Helix.yaw
#163
dave-doty
closed
3 years ago
3
Dev
#162
dave-doty
closed
3 years ago
0
Dev
#161
dave-doty
closed
3 years ago
0
closes #159; remove IDT name field; now Strand.name is the official name of the strand; bumped minor version since this is a breaking change
#160
dave-doty
closed
3 years ago
0
remove IDT name field
#159
dave-doty
closed
3 years ago
1
Dev
#158
dave-doty
closed
3 years ago
1
Write idt plate excel file uses reasonable defaults
#157
dave-doty
closed
3 years ago
1
Dev
#156
dave-doty
closed
3 years ago
0
Previous
Next