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UC-Davis-molecular-computing
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scadnano-python-package
Python scripting library for generating designs readable by scadnano.
https://scadnano.org
MIT License
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closes #238: Domain colors
#255
dave-doty
closed
1 year ago
0
closes #252: add method `Design.base_pairs()`
#254
dave-doty
closed
1 year ago
0
space out nucleotides in oxDNA export of loopouts
#253
dave-doty
opened
1 year ago
0
add method `Design.base_pairs`
#252
dave-doty
closed
1 year ago
0
drop support for Python 3.6
#251
dave-doty
closed
1 year ago
0
Dev
#250
dave-doty
closed
1 year ago
0
oxDNA Export with Helix Group Pitch / Yaw Bug
#249
ajvetturini
opened
1 year ago
3
shared binding domains
#248
dave-doty
opened
1 year ago
0
Add filename extensions to oxDNA exports with filename_no_extension set.
#247
cgevans
closed
1 year ago
0
Oxview export
#246
cgevans
closed
1 year ago
2
oxDNA file export with filename does not set extension
#245
cgevans
opened
1 year ago
0
Add warn_duplicate_strand_names argument to from_scadnano_file
#244
cgevans
opened
1 year ago
0
Only warn about strands with duplicate names that can't be copies of each other.
#243
cgevans
opened
1 year ago
0
Design.from_scadnano_file has no option to suppress warnings for duplicate strand names
#242
cgevans
opened
1 year ago
0
240 support extensions in oxdna export
#241
dave-doty
closed
1 year ago
0
support Extensions in oxDNA export
#240
cgevans
closed
1 year ago
2
export Bioneer files
#239
dave-doty
opened
1 year ago
0
Domain colors
#238
dave-doty
closed
1 year ago
0
Dev
#237
dave-doty
closed
2 years ago
0
fixed issue where get_normal_vector_to was being calculated incorrect…
#236
DanielHader
closed
2 years ago
0
fix bug in oxDNA export giving zero normal vector on loopouts
#235
dave-doty
closed
2 years ago
1
export newer Excel file format
#234
dave-doty
closed
1 year ago
0
Set Position3D as frozen
#233
cgevans
closed
2 years ago
0
fixes #231: Design.add_full_crossover and Design.add_half_crossover should check for existing crossovers
#232
dave-doty
closed
2 years ago
0
`Design.add_full_crossover` and `Design.add_half_crossover` should check for existing crossovers
#231
dave-doty
closed
2 years ago
0
Closes #2; support Extensions on the end of a Strand
#230
UnHumbleBen
closed
2 years ago
25
228 option to export cadnano with no whitespace
#229
dave-doty
closed
2 years ago
0
option to export cadnano with no whitespace
#228
dave-doty
closed
2 years ago
0
raise exception on unpaired insertions/deletions in `Design.inline_insertions_deletions` and oxDNA/oxView/CanDo export
#227
dave-doty
opened
2 years ago
0
Dev
#226
dave-doty
closed
2 years ago
0
#224 allow other table formats besides markdown in design.plate maps markdown
#225
dave-doty
closed
2 years ago
0
allow other table formats besides Markdown in `Design.plate_maps`
#224
dave-doty
closed
2 years ago
1
Closes #149; store DNA sequence in domains and loopouts, not in strand
#223
UnHumbleBen
closed
2 years ago
0
allow `Design.plate_maps` parameter `well_marker` to be function of well position
#222
dave-doty
closed
2 years ago
1
Dev
#221
dave-doty
closed
2 years ago
0
closes #219: change `Design.strand` to `Design.draw_strand`
#220
dave-doty
closed
2 years ago
0
change `Design.strand` to `Design.draw_strand`
#219
dave-doty
closed
2 years ago
1
ensure each table line/PlateMap has a unique (plate name, each volume)
#218
dave-doty
closed
2 years ago
1
Helix order when importing from cadnano
#217
tcosmo
closed
2 years ago
0
#210 generate plate map
#216
dave-doty
closed
2 years ago
0
stap_loop -> stapLoop in cadnano export
#215
tcosmo
closed
2 years ago
0
Cadnano2 import of crossover to same helix
#214
tcosmo
closed
2 years ago
0
fixes #212: change length of modification "connector"
#213
dave-doty
closed
2 years ago
0
change length of modification "connector"
#212
dave-doty
closed
2 years ago
1
add option to export to cadnano with no whitespace
#211
dave-doty
closed
2 years ago
1
generate plate map
#210
dave-doty
closed
2 years ago
1
crossover to same helix should be converted properly in cadnano import
#209
dave-doty
closed
2 years ago
1
0.17.1
#208
dave-doty
closed
2 years ago
1
Bump version to 0.17.1
#207
UnHumbleBen
closed
2 years ago
0
Fixes #205; make xlwt a dependency for pip installing
#206
UnHumbleBen
closed
2 years ago
0
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