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UCLOrengoGroup
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cath-tools
Protein structure comparison tools such as SSAP and SNAP
http://cath-tools.readthedocs.io
GNU General Public License v3.0
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Recommended options for SCOP40 test
#81
rcedgar
opened
1 month ago
1
cath-resolve-hits.macos-10
#80
bioinfo2016
opened
8 months ago
0
Can I use a CATH online server scan multiple data (pdb.) a one time
#79
yang-nei
opened
1 year ago
0
Question on unclassified PDB files
#78
Mind-Ex-Machina
closed
1 year ago
0
Scoring Output
#77
Newlcg
opened
1 year ago
0
cath.superpose ssaps files optimization ?
#76
tubiana
opened
3 years ago
1
min-dc-hmm-coverage flag meaning
#75
nsneeladrisen
closed
3 years ago
1
Parsing error when using hmmscan results file
#74
mrztm
closed
3 years ago
6
Compiling on linux
#73
Juke34
closed
4 years ago
28
Create software for structural scans (eg CATHEDRAL)
#72
sillitoe
opened
4 years ago
0
CRH: suggested range for '--long-domains-preference'?
#71
sillitoe
closed
4 years ago
8
Can cath-resolve-hits be used to merge InterProScan results?
#70
xunsheng
opened
5 years ago
2
Fail (or at least warn) if obliterating the chain-codes of a multi-chain structure
#69
tonyelewis
closed
6 years ago
1
Chain id issue when using cath-superpose to orient whole PDBs
#68
nataliedawson
closed
6 years ago
6
Revised pull request for handling dynamic only GSL.
#67
anadon
closed
6 years ago
2
Add a 'install' target
#66
anadon
closed
6 years ago
11
Add flag to set using dynamic GSL, documentation updates
#65
anadon
closed
6 years ago
2
update dependencies for perl tests
#64
sillitoe
closed
6 years ago
1
Installing Boost >= 1.58 on Ubuntu (16.04)
#63
sillitoe
closed
6 years ago
3
test failure with 'prove -l -v t': instructions should be changed
#62
anadon
closed
6 years ago
7
Allow cath-tools to build using libgsl.so in addition to libgsl.a
#61
anadon
closed
6 years ago
6
Add files to gitignore and improve building on linux platforms.
#60
anadon
closed
6 years ago
0
Build time is slow
#59
anadon
closed
6 years ago
1
Add build instructions to README.md
#58
anadon
closed
6 years ago
1
Build failure on Arch Linux
#57
anadon
closed
6 years ago
2
Print in version information whether running under ASAN
#56
tonyelewis
closed
6 years ago
0
cath-superpose segfaults on mismatching residues in alignment
#55
sillitoe
closed
6 years ago
2
Error building cath-tools with boost 1.6x.x
#54
euduca
closed
6 years ago
2
Add --pdb-infile option to cath-ssap and use it in --do-the-ssaps
#53
tonyelewis
opened
6 years ago
0
Alignment lines in supn for 4tsvA vs 4tswB are clearly wrong
#52
tonyelewis
closed
6 years ago
1
Improve docs,tests etc of handling of residues that don't have a backbone complete
#51
tonyelewis
opened
6 years ago
0
Some cath-ssaps that work with --prot-src-files of PDB_DSSP, fail with PDB
#50
tonyelewis
opened
6 years ago
0
Some pairs fail under cath-ssap with PDB_DSSP that work with PDB_DSSP_SEC
#49
tonyelewis
opened
6 years ago
2
Alignment acquirers and outputters should all handle regions
#48
tonyelewis
opened
6 years ago
0
cath-refine-align doesn't respect --align-regions when writing alignments
#47
tonyelewis
closed
6 years ago
2
cath-ssap segfaults on chain 0 of 1br7
#46
tonyelewis
closed
6 years ago
1
Allow cath-ssap to restrict regions in PDB_DSSP mode
#45
tonyelewis
opened
6 years ago
0
Resolve conflict of CRH hidden options that are in Gene3D docs
#44
tonyelewis
closed
6 years ago
1
Problem parsing CORA alignment file
#43
tonyelewis
closed
6 years ago
3
[dependency: v14.2 onwards] {cath-superpose.ubuntu14.04} libstdc++.so.6: version `GLIBCXX_3.4.22' not found
#42
shouldsee
closed
6 years ago
5
Enable CRH to filter out hmmsearch output hits covering little of the HMM
#41
tonyelewis
closed
7 years ago
2
Improve superpositions of multiple domains
#40
tonyelewis
opened
7 years ago
0
cath-superpose gives confusing options error message
#39
tonyelewis
closed
6 years ago
1
Add options to cath-ssap for specifying regions to be aligned
#38
tonyelewis
closed
7 years ago
2
Add tests for handling MSE HETATMs before TER record
#37
tonyelewis
opened
7 years ago
0
Alignment HTML isn't rendering with fixed-width font on chrome
#36
tonyelewis
closed
7 years ago
2
Running cath-ssaps on files in other directories can causes errors
#35
tonyelewis
opened
7 years ago
2
Unexpected superposition
#34
nataliedawson
closed
7 years ago
2
Add a colourer for secondary-structure (and accessibility)
#33
tonyelewis
opened
7 years ago
0
cath-resolve-hits: parse hmmscan output
#32
sillitoe
closed
6 years ago
2
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