UCLOrengoGroup cath-tools issues

UCLOrengoGroup / cath-tools

Protein structure comparison tools such as SSAP and SNAP

http://cath-tools.readthedocs.io

GNU General Public License v3.0

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issues

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Recommended options for SCOP40 test

#81 rcedgar opened 1 month ago
1
cath-resolve-hits.macos-10

#80 bioinfo2016 opened 8 months ago
0
Can I use a CATH online server scan multiple data (pdb.) a one time

#79 yang-nei opened 1 year ago
0
Question on unclassified PDB files

#78 Mind-Ex-Machina closed 1 year ago
0
Scoring Output

#77 Newlcg opened 1 year ago
0
cath.superpose ssaps files optimization ?

#76 tubiana opened 3 years ago
1
min-dc-hmm-coverage flag meaning

#75 nsneeladrisen closed 3 years ago
1
Parsing error when using hmmscan results file

#74 mrztm closed 3 years ago
6
Compiling on linux

#73 Juke34 closed 4 years ago
28
Create software for structural scans (eg CATHEDRAL)

#72 sillitoe opened 4 years ago
0
CRH: suggested range for '--long-domains-preference'?

#71 sillitoe closed 4 years ago
8
Can cath-resolve-hits be used to merge InterProScan results?

#70 xunsheng opened 5 years ago
2
Fail (or at least warn) if obliterating the chain-codes of a multi-chain structure

#69 tonyelewis closed 6 years ago
1
Chain id issue when using cath-superpose to orient whole PDBs

#68 nataliedawson closed 6 years ago
6
Revised pull request for handling dynamic only GSL.

#67 anadon closed 6 years ago
2
Add a 'install' target

#66 anadon closed 6 years ago
11
Add flag to set using dynamic GSL, documentation updates

#65 anadon closed 6 years ago
2
update dependencies for perl tests

#64 sillitoe closed 6 years ago
1
Installing Boost >= 1.58 on Ubuntu (16.04)

#63 sillitoe closed 6 years ago
3
test failure with 'prove -l -v t': instructions should be changed

#62 anadon closed 6 years ago
7
Allow cath-tools to build using libgsl.so in addition to libgsl.a

#61 anadon closed 6 years ago
6
Add files to gitignore and improve building on linux platforms.

#60 anadon closed 6 years ago
0
Build time is slow

#59 anadon closed 6 years ago
1
Add build instructions to README.md

#58 anadon closed 6 years ago
1
Build failure on Arch Linux

#57 anadon closed 6 years ago
2
Print in version information whether running under ASAN

#56 tonyelewis closed 6 years ago
0
cath-superpose segfaults on mismatching residues in alignment

#55 sillitoe closed 6 years ago
2
Error building cath-tools with boost 1.6x.x

#54 euduca closed 6 years ago
2
Add --pdb-infile option to cath-ssap and use it in --do-the-ssaps

#53 tonyelewis opened 6 years ago
0
Alignment lines in supn for 4tsvA vs 4tswB are clearly wrong

#52 tonyelewis closed 6 years ago
1
Improve docs,tests etc of handling of residues that don't have a backbone complete

#51 tonyelewis opened 6 years ago
0
Some cath-ssaps that work with --prot-src-files of PDB_DSSP, fail with PDB

#50 tonyelewis opened 6 years ago
0
Some pairs fail under cath-ssap with PDB_DSSP that work with PDB_DSSP_SEC

#49 tonyelewis opened 6 years ago
2
Alignment acquirers and outputters should all handle regions

#48 tonyelewis opened 6 years ago
0
cath-refine-align doesn't respect --align-regions when writing alignments

#47 tonyelewis closed 6 years ago
2
cath-ssap segfaults on chain 0 of 1br7

#46 tonyelewis closed 6 years ago
1
Allow cath-ssap to restrict regions in PDB_DSSP mode

#45 tonyelewis opened 6 years ago
0
Resolve conflict of CRH hidden options that are in Gene3D docs

#44 tonyelewis closed 6 years ago
1
Problem parsing CORA alignment file

#43 tonyelewis closed 6 years ago
3
[dependency: v14.2 onwards] {cath-superpose.ubuntu14.04} libstdc++.so.6: version `GLIBCXX_3.4.22' not found

#42 shouldsee closed 6 years ago
5
Enable CRH to filter out hmmsearch output hits covering little of the HMM

#41 tonyelewis closed 7 years ago
2
Improve superpositions of multiple domains

#40 tonyelewis opened 7 years ago
0
cath-superpose gives confusing options error message

#39 tonyelewis closed 6 years ago
1
Add options to cath-ssap for specifying regions to be aligned

#38 tonyelewis closed 7 years ago
2
Add tests for handling MSE HETATMs before TER record

#37 tonyelewis opened 7 years ago
0
Alignment HTML isn't rendering with fixed-width font on chrome

#36 tonyelewis closed 7 years ago
2
Running cath-ssaps on files in other directories can causes errors

#35 tonyelewis opened 7 years ago
2
Unexpected superposition

#34 nataliedawson closed 7 years ago
2
Add a colourer for secondary-structure (and accessibility)

#33 tonyelewis opened 7 years ago
0
cath-resolve-hits: parse hmmscan output

#32 sillitoe closed 6 years ago
2