UCSC-nanopore-cgl nanopore-RNN issues

UCSC-nanopore-cgl / nanopore-RNN

Collaboration repository with Nanopore Group

MIT License

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Alignment

#48 ghost closed 6 years ago
2
Multi gpu

#47 adbailey4 closed 7 years ago
1
Signalalign integration

#46 adbailey4 closed 7 years ago
1
Network test

#45 rojinsafavi closed 7 years ago
1
Queue testing

#44 adbailey4 closed 7 years ago
1
Tar training data

#43 ghost closed 7 years ago
0
Create Nanonet model and implement Deepnano labeling (#41)

#42 adbailey4 closed 7 years ago
1
Create Nanonet model and implement Deepnano labeling

#41 adbailey4 closed 7 years ago
1
Deepnano labels

#40 adbailey4 closed 7 years ago
1
modification to the way each indexed labels are paired with features

#39 rojinsafavi closed 7 years ago
1
Variable batch size

#38 adbailey4 closed 7 years ago
1
Match_label_with_feature bug when more than one event is skipped

#37 adbailey4 closed 7 years ago
1
Unit test

#36 rojinsafavi closed 7 years ago
1
Sort bed file

#35 rojinsafavi closed 7 years ago
2
Create framework for creating tests

#34 adbailey4 closed 7 years ago
2
Create codecov.yaml file

#33 adbailey4 closed 7 years ago
1
Create setup.py script which allows for nanonet.features path

#32 adbailey4 closed 7 years ago
1
Data queue bug fix

#31 adbailey4 closed 7 years ago
1
Test coverage

#30 adbailey4 closed 7 years ago
1
Speed checks using Tensorboard and a chrome trace file

#29 adbailey4 closed 7 years ago
1
added some unittests for data_preparation.py, made some changes to da…

#28 rojinsafavi closed 7 years ago
2
Test accuracy and push to s3

#27 adbailey4 closed 7 years ago
0
Reload trained model:

#26 adbailey4 closed 7 years ago
0
Revert "Revert "Revert "Revert "Get travis CI working""""

#25 adbailey4 closed 7 years ago
0
Revert "Revert "Revert "Get travis CI working"""

#24 adbailey4 closed 7 years ago
0
Revert "Revert "Get travis CI working""

#23 adbailey4 closed 7 years ago
1
Revert "Get travis CI working"

#22 adbailey4 closed 7 years ago
0
Get travis CI working

#21 adbailey4 closed 7 years ago
0
Create installation instructions

#20 adbailey4 closed 7 years ago
0
Test writing

#19 adbailey4 closed 7 years ago
1
Save and load network

#18 adbailey4 closed 7 years ago
0
Create validation mechanism and update operations

#17 adbailey4 closed 7 years ago
0
choose if you want to prepare data for template or complement strand

#16 rojinsafavi closed 7 years ago
0
Add json config file for network in nanotensor

#15 adbailey4 closed 7 years ago
0
Rojin

#14 rojinsafavi closed 7 years ago
0
Touch up the make_bed_file method in signalalign_utils.py

#13 adbailey4 closed 7 years ago
0
Update a bunch of stuff

#12 adbailey4 closed 7 years ago
0
Bailey edits

#11 adbailey4 closed 7 years ago
0
Bailey edits

#10 adbailey4 closed 7 years ago
0
Embed Signal align output with probabilities

#9 adbailey4 closed 6 years ago
2
Event segmentation

#8 adbailey4 closed 6 years ago
1
Add multi GPU support

#7 adbailey4 closed 6 years ago
1
Create mulit layer BLSTM model using Tensor Flow

#6 adbailey4 closed 7 years ago
1
Create mulit layer BLSTM model using Keras

#5 adbailey4 closed 7 years ago
1
Create feature vectors

#4 adbailey4 closed 7 years ago
1
Label with EventAlign

#3 adbailey4 closed 6 years ago
1
Bailey edits

#2 adbailey4 closed 7 years ago
0
add training script

#1 adbailey4 closed 7 years ago
0