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EdaLoadingIssues
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PopBio megastudy - weird collection protocol: 16s rrna sequencing assay targeting v1-v2 region
#90
bobular
opened
6 months ago
0
PopBio megastudy "collection date(s) raw" should not be annotated as a date
#89
bobular
opened
7 months ago
1
PopBio - separate Study Institution variable into Institution and Tag variables
#88
bobular
closed
10 months ago
1
PopBio - add a "PopBio Study ID" Study variable to megastudy to hold VBPnnnnnnn IDs
#87
bobular
closed
10 months ago
1
Map - no way to filter easily on "mosquitoes" (or "ticks" or "sandflies" etc)
#86
bobular
opened
1 year ago
2
Popbio/megastudy fix Culex pipiens morphological group
#85
bobular
closed
11 months ago
3
Megastudy QA issues needing data re-curation or owl file edits
#84
bobular
opened
1 year ago
4
QA issues arising from popbio data load for the beta release
#83
bobular
opened
1 year ago
3
Remove pre-beta popbio data from manualDelivery
#82
bobular
opened
1 year ago
0
Add hidden collection site variable `max_gadm_resolution` handling for placename lookup
#81
bobular
closed
1 year ago
2
Write SOP doc describing map data preprocessing
#80
steve-fischer-200
opened
1 year ago
4
Audit/explore megastudy data to find cases where naive analyses/plots could be misleading
#79
steve-fischer-200
opened
1 year ago
0
Define and document SOP for new variable annotations
#78
steve-fischer-200
opened
1 year ago
0
Geo lookups from lat/long to place names
#77
steve-fischer-200
opened
1 year ago
1
Make geographic feature ontology available to mapper tool
#76
steve-fischer-200
opened
1 year ago
2
Map: Identify what all variables need to go from tall to wide representations
#75
d-callan
closed
1 year ago
1
Map: Reorganize variable tree/ categories to better accomodate tall to wide data reshaping
#74
d-callan
closed
1 year ago
3
Map: multi-filter and collection annotations to wide data
#73
d-callan
closed
1 year ago
1
Tall to Wide data reshaping master ticket
#72
steve-fischer-200
opened
1 year ago
1
Data: Clean up display names of ontology terms
#71
steve-fischer-200
closed
1 year ago
1
Map: Introduce new value for Sample Type to differentiate true pooled specimens
#68
d-callan
closed
1 year ago
16
Map: Split variable for pathogen presence in two
#67
d-callan
closed
1 year ago
1
Map: Identify all variables that require 'Plan D' annotations
#66
d-callan
closed
1 year ago
6
Map: Need to ensure temporal variables are annotated as such
#65
d-callan
closed
1 year ago
1
Data: Back end `continuous-variable` endpoint having trouble with WWARN "publication year"
#70
bobular
closed
1 year ago
8
Map: Remove studies representing sample types which aren't individual or pooled specimens
#69
d-callan
closed
1 year ago
5
Map: Load fixed study-level vocabularies for species
#64
d-callan
closed
1 year ago
5
Map: Add annotation `hasStudyDependentVocabulary` to database
#63
d-callan
opened
1 year ago
2
Map: Add annotation on terms indicating sample size per record
#62
d-callan
opened
1 year ago
0
mega-study: specimen count variable placement in variable tree is problematic
#61
bobular
closed
1 year ago
2
Data: mega-study sample.specimen_count has some crazy values
#60
bobular
closed
1 year ago
4
Data: Finalize SOP around loading agile datasets (using nextflow)
#59
steve-fischer-200
opened
1 year ago
0
Update dataset cleaning process to generate proper IsaTab
#58
steve-fischer-200
closed
1 year ago
3
Data: Handle ontology term mapping for bld 58+ datasets
#57
steve-fischer-200
closed
1 year ago
2
Data: Dump and load addtional ~100 bld 57 datasets
#56
steve-fischer-200
opened
1 year ago
3
Update study loading system to support IsaTab
#55
dmfalke
closed
1 year ago
0
include mergekey in sample results downloads
#54
danicahelb
opened
1 year ago
0
Ensure mbio study details info is accurate
#52
danicahelb
opened
1 year ago
3
Standardize integration pipeline between mbio & ClinEpiDB
#53
danicahelb
closed
11 months ago
1
mbio: Bee study, variable "Depth" only has one value = 0
#51
asizemore
opened
1 year ago
0
mbio MALED diarrhea: structure of the dataset is incorrect!
#49
danicahelb
closed
1 year ago
3
mbio MALED 2yr: structure of the dataset is incorrect!
#48
danicahelb
closed
1 year ago
2
mbio ontology: update parent for age & age group
#50
danicahelb
closed
1 year ago
3
mbio: too many "sample ID" terms
#46
danicahelb
closed
1 year ago
2
Cross-silo: studies in both mbio & clinepi should use the same format for key identifiers
#47
danicahelb
closed
1 year ago
4
mbio: generalized solution to make Age group ordinal
#45
danicahelb
opened
1 year ago
1
Add linkages on ClinEpi & mbio sites for MAL-ED samples with microbiome data
#44
danicahelb
closed
1 year ago
5
GEMS1 in mbio: Age group should be ordinal
#43
asizemore
closed
1 year ago
3
Mbio downloads: should assays have required variables?
#42
asizemore
opened
2 years ago
5
Mbio: studies in eda-inc missing assay nodes
#41
asizemore
opened
2 years ago
0
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