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VH-Lab
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vhlab-microscopyimageanalysis-matlab
Matlab app for analysis of high density imaging data like that from Array Tomography
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where to put thresholdinfo so it is not just stuffed into threshold parameters sometimes?
#46
stevevanhooser
opened
2 years ago
0
create creator objects like mia.creator.image.threshold
#45
stevevanhooser
opened
2 years ago
1
miadir in new package branch shouldn't have static methods
#44
stevevanhooser
opened
2 years ago
2
added mia.creator base class; not tested
#43
stevevanhooser
closed
2 years ago
0
create a package form of vhlab-arraytomography
#42
stevevanhooser
opened
3 years ago
0
adding docs
#41
stevevanhooser
opened
3 years ago
0
add ROI filter by number of pixels above a threshold
#40
stevevanhooser
opened
3 years ago
0
add an image blur + threshold
#39
stevevanhooser
opened
3 years ago
0
make triple colocalization include shift options in x, y, and z
#38
stevevanhooser
closed
3 years ago
2
add option to toggle threshold on/off in graphic selection of at_threshold
#37
dlwise
opened
4 years ago
0
line drawing fails if there is only 1 ROI
#36
stevevanhooser
closed
4 years ago
0
create function to report number of ROI intersections per z frame
#35
stevevanhooser
closed
4 years ago
0
check triple colocalization code to ensure right number in specific example
#34
stevevanhooser
closed
4 years ago
1
Co-localization reports
#33
stevevanhooser
opened
4 years ago
1
add option in at_image_threshold to ignore 0 bin
#32
stevevanhooser
opened
4 years ago
0
image viewer + image navigator: should allow multiple selections (images in different colors)
#31
stevevanhooser
opened
4 years ago
0
image viewer: axes should stay the same always, add a full view option
#30
stevevanhooser
opened
4 years ago
0
image viewer should be in separate window
#29
stevevanhooser
opened
4 years ago
0
Arbitrarypropfilter
#28
stevevanhooser
closed
4 years ago
0
write a new multivariate filter method based on ROI properties
#27
stevevanhooser
closed
4 years ago
1
reimplement colocalization based on center of mass given new parameter savings
#26
stevevanhooser
closed
4 years ago
1
Add analysis tool to export colocalization and ROI parameters to spreadsheet
#25
stevevanhooser
opened
5 years ago
2
Determine co-localization by center-of-mass distance
#24
stevevanhooser
closed
5 years ago
1
Update at_colocalization_neighbors.m
#23
emmagao29
opened
6 years ago
0
About the new neighbors code
#22
emmagao29
closed
6 years ago
1
Update at_colocalization_neighbors.m
#21
emmagao29
opened
6 years ago
0
Update at_colocalization_neighbors.m
#20
emmagao29
closed
6 years ago
0
Update at_colocalization_neighbors.m
#19
emmagao29
opened
6 years ago
2
is there any way to exclude puncta that colocalize with another puncta dataset?
#18
stevevanhooser
opened
6 years ago
1
save ROI sizes info into excel/number file?
#17
berithi
closed
6 years ago
4
info box isn't working
#16
stevevanhooser
closed
6 years ago
3
volume filtering GUI gives meaningless error messages
#15
stevevanhooser
closed
6 years ago
0
error about setting image threshold
#14
blue745
closed
6 years ago
6
non graphical Z filtering not working (but graphical one works great! thanks :)
#13
berithi
closed
6 years ago
1
add ability to make a new colocalization analysis just be "rethresholding" a previous colocalization analysis
#12
stevevanhooser
closed
6 years ago
0
remove thresholded pixels by contents of another channel
#11
stevevanhooser
closed
6 years ago
1
exclude ROIs by manual selection
#10
stevevanhooser
opened
6 years ago
0
simultaneous showing of ROI overlap and CLA overlap doesn't work
#9
stevevanhooser
closed
6 years ago
1
volume filtering gets stuck
#8
berithi
closed
6 years ago
2
Can't find colocalization file
#7
berithi
closed
6 years ago
21
need test data set
#6
stevevanhooser
closed
6 years ago
1
z stack view changes when switching images..
#5
stevevanhooser
closed
6 years ago
1
the threshold scale in at_image_threshold doesn't match what the user sees
#4
stevevanhooser
closed
6 years ago
0
at_roi_connect not working properly
#3
berithi
closed
6 years ago
3
drawing outlines of rois and numbers takes too long
#2
berithi
closed
6 years ago
2
poor histogram view in roi volume filter
#1
berithi
closed
6 years ago
1