VH-Lab vhlab-microscopyimageanalysis-matlab issues

VH-Lab / vhlab-microscopyimageanalysis-matlab

Matlab app for analysis of high density imaging data like that from Array Tomography

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where to put thresholdinfo so it is not just stuffed into threshold parameters sometimes?

#46 stevevanhooser opened 2 years ago
0
create creator objects like mia.creator.image.threshold

#45 stevevanhooser opened 2 years ago
1
miadir in new package branch shouldn't have static methods

#44 stevevanhooser opened 2 years ago
2
added mia.creator base class; not tested

#43 stevevanhooser closed 2 years ago
0
create a package form of vhlab-arraytomography

#42 stevevanhooser opened 3 years ago
0
adding docs

#41 stevevanhooser opened 3 years ago
0
add ROI filter by number of pixels above a threshold

#40 stevevanhooser opened 3 years ago
0
add an image blur + threshold

#39 stevevanhooser opened 3 years ago
0
make triple colocalization include shift options in x, y, and z

#38 stevevanhooser closed 3 years ago
2
add option to toggle threshold on/off in graphic selection of at_threshold

#37 dlwise opened 4 years ago
0
line drawing fails if there is only 1 ROI

#36 stevevanhooser closed 4 years ago
0
create function to report number of ROI intersections per z frame

#35 stevevanhooser closed 4 years ago
0
check triple colocalization code to ensure right number in specific example

#34 stevevanhooser closed 4 years ago
1
Co-localization reports

#33 stevevanhooser opened 4 years ago
1
add option in at_image_threshold to ignore 0 bin

#32 stevevanhooser opened 4 years ago
0
image viewer + image navigator: should allow multiple selections (images in different colors)

#31 stevevanhooser opened 4 years ago
0
image viewer: axes should stay the same always, add a full view option

#30 stevevanhooser opened 4 years ago
0
image viewer should be in separate window

#29 stevevanhooser opened 4 years ago
0
Arbitrarypropfilter

#28 stevevanhooser closed 4 years ago
0
write a new multivariate filter method based on ROI properties

#27 stevevanhooser closed 4 years ago
1
reimplement colocalization based on center of mass given new parameter savings

#26 stevevanhooser closed 4 years ago
1
Add analysis tool to export colocalization and ROI parameters to spreadsheet

#25 stevevanhooser opened 5 years ago
2
Determine co-localization by center-of-mass distance

#24 stevevanhooser closed 5 years ago
1
Update at_colocalization_neighbors.m

#23 emmagao29 opened 6 years ago
0
About the new neighbors code

#22 emmagao29 closed 6 years ago
1
Update at_colocalization_neighbors.m

#21 emmagao29 opened 6 years ago
0
Update at_colocalization_neighbors.m

#20 emmagao29 closed 6 years ago
0
Update at_colocalization_neighbors.m

#19 emmagao29 opened 6 years ago
2
is there any way to exclude puncta that colocalize with another puncta dataset?

#18 stevevanhooser opened 6 years ago
1
save ROI sizes info into excel/number file?

#17 berithi closed 6 years ago
4
info box isn't working

#16 stevevanhooser closed 6 years ago
3
volume filtering GUI gives meaningless error messages

#15 stevevanhooser closed 6 years ago
0
error about setting image threshold

#14 blue745 closed 6 years ago
6
non graphical Z filtering not working (but graphical one works great! thanks :)

#13 berithi closed 6 years ago
1
add ability to make a new colocalization analysis just be "rethresholding" a previous colocalization analysis

#12 stevevanhooser closed 6 years ago
0
remove thresholded pixels by contents of another channel

#11 stevevanhooser closed 6 years ago
1
exclude ROIs by manual selection

#10 stevevanhooser opened 6 years ago
0
simultaneous showing of ROI overlap and CLA overlap doesn't work

#9 stevevanhooser closed 6 years ago
1
volume filtering gets stuck

#8 berithi closed 6 years ago
2
Can't find colocalization file

#7 berithi closed 6 years ago
21
need test data set

#6 stevevanhooser closed 6 years ago
1
z stack view changes when switching images..

#5 stevevanhooser closed 6 years ago
1
the threshold scale in at_image_threshold doesn't match what the user sees

#4 stevevanhooser closed 6 years ago
0
at_roi_connect not working properly

#3 berithi closed 6 years ago
3
drawing outlines of rois and numbers takes too long

#2 berithi closed 6 years ago
2
poor histogram view in roi volume filter

#1 berithi closed 6 years ago
1