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VirtualFlyBrain
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VFB_reporting
Scripts for reporting on the state of VFB content and pipeline
https://github.com/VirtualFlyBrain/VFB_reporting_results
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[Snyk] Fix for 10 vulnerabilities
#56
Robbie1977
opened
2 weeks ago
0
[Snyk] Fix for 2 vulnerabilities
#55
Robbie1977
opened
2 weeks ago
0
[Snyk] Security upgrade urllib3 from 2.0.7 to 2.2.2
#54
Robbie1977
opened
2 months ago
0
[Snyk] Security upgrade numpy from 1.21.3 to 1.22.2
#53
Robbie1977
opened
1 year ago
0
Create ID_mapping_tables.py
#52
Clare72
closed
2 years ago
0
make tsvs of ID mappings
#51
Clare72
closed
2 years ago
0
Individual classification diff
#50
Clare72
closed
2 years ago
0
Fanc reports
#49
Clare72
closed
2 years ago
0
Diff reports
#48
Clare72
closed
3 years ago
0
Make VFB server diff reports easier to understand
#47
dosumis
closed
3 years ago
6
Larval reports
#46
Clare72
closed
3 years ago
0
Check for multiple annotations
#45
Clare72
closed
3 years ago
0
Update to content report generation
#44
Clare72
closed
3 years ago
0
code to add numbers of annotations
#43
Clare72
closed
3 years ago
0
additions to content report
#42
Clare72
closed
3 years ago
0
code to report ontology relationships
#41
Clare72
closed
3 years ago
0
Report number of formal assertions in ontology to summary report
#40
dosumis
closed
3 years ago
0
Add reports of number of expression annotations to summary reports
#39
dosumis
closed
3 years ago
4
Content report code
#38
Clare72
closed
3 years ago
0
Make report of all painted regions on each adult brain region
#37
Clare72
opened
3 years ago
1
Fix L1 reporting
#36
dosumis
closed
3 years ago
1
scripts for generating curation records from reports
#35
Clare72
closed
4 years ago
0
Fixed nonetype error from flattening lists in comparison.py
#34
Clare72
closed
4 years ago
0
Improve diff reports used for releases
#33
dosumis
opened
4 years ago
2
CATMAID reporting
#32
dosumis
opened
4 years ago
0
Make TSV on FBbt repo tracking papers curated (novel_anat done) as FBrf if available, otherwise as DOI.
#31
dosumis
closed
3 years ago
1
First draft reporting schema file.
#30
dosumis
opened
4 years ago
0
Bug with reporting CATMAID vs KB for some papers
#29
dosumis
opened
4 years ago
0
Extend expression_pipelist with CATMAID papers
#28
dosumis
opened
4 years ago
3
Write query to cover current FlyBase->VFB transgene linkouts
#27
dosumis
opened
4 years ago
4
Script automated generation of linkout tables & posting to GitHub.
#26
dosumis
closed
6 months ago
3
Switching neo queries to work with new schema. Should fix #24
#25
dosumis
closed
4 years ago
3
FAFB reports don't find Individuals only classified as neuron
#24
dosumis
closed
4 years ago
11
Fix get_catmaid_papers.py token error
#23
dosumis
opened
4 years ago
1
Functionality to check if skids are annotated only as neuron in VFB
#22
Clare72
closed
4 years ago
0
Write reporting scripts for CATMAID
#21
dosumis
closed
3 years ago
1
Write reporting scripts for CATMAID
#20
dosumis
closed
3 years ago
1
Write reporting scripts for CATMAID
#19
dosumis
opened
4 years ago
0
Add Adult VNC to reporting ready for data injest
#18
Robbie1977
opened
4 years ago
1
Extend CATMAID VFB comparison table to count all neurons directly annotated *only* with 'neuron'
#17
dosumis
closed
4 years ago
3
Update to use Official fafb names
#16
Robbie1977
closed
4 years ago
0
Update scripts to use CATMAID official name annotations
#15
Robbie1977
opened
4 years ago
0
Set reporting to run nightly (Via Travis cron job)
#14
dosumis
closed
3 years ago
0
Adding reports for Cell type annotations
#13
Robbie1977
closed
5 years ago
0
Get fbbt annotations from CATMAID
#12
Clare72
closed
3 years ago
1
adding branch to commit message
#11
Robbie1977
closed
5 years ago
0
Improvements to catmaid reports
#10
Clare72
closed
5 years ago
0
Catmaid reports
#9
Clare72
closed
5 years ago
0
Owlery
#8
dosumis
closed
5 years ago
1
Build basic lib to wrap OWLery queries.
#7
dosumis
closed
4 years ago
1
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