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WayScience
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CytoSnake
Orchestrating high-dimensional cell morphology data processing pipelines
https://cytosnake.readthedocs.io
Creative Commons Attribution 4.0 International
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Plate Map Search Error in Cytosnake Workflow
#99
axiomcura
opened
8 months ago
0
CytoSnake crashes when using `.parquet` profiles.
#98
axiomcura
opened
8 months ago
0
CytoSummaryNet new aggregation module for CytoSnake
#97
axiomcura
opened
9 months ago
0
Add Unit testing documentation
#96
axiomcura
opened
10 months ago
0
Reduce Code Duplication Due To Profiling Design
#95
axiomcura
opened
10 months ago
0
Create CI workflows to test on other types of OS
#94
axiomcura
opened
10 months ago
0
Create functional tests for benchmarking
#93
axiomcura
opened
10 months ago
0
Create documentation for Unit tests
#92
axiomcura
opened
10 months ago
0
Update config files with newly added Pycytominer `None` defaults
#91
axiomcura
opened
11 months ago
0
Benchmarking Workflows in Cytosnake with Memray 📊
#90
axiomcura
closed
10 months ago
1
Remove iteration process in `feature_select`
#89
axiomcura
opened
11 months ago
1
Use CI/CD tools to automatically synchronize the Bioconda version
#88
axiomcura
opened
1 year ago
0
CytoSnake Bug Fixes From Cell-Health Data Usage
#87
axiomcura
closed
1 year ago
1
Revamping `get_input_path()`
#86
axiomcura
opened
1 year ago
0
CytoSnake modules fails when using multiple inputs and generating one output due to `get_data_path()`
#85
axiomcura
opened
1 year ago
0
Update data storage locations
#84
axiomcura
opened
1 year ago
0
Develop a function that searches for plate map based on given plate name.
#83
axiomcura
opened
1 year ago
0
Establishing config standards for class methods
#82
axiomcura
opened
1 year ago
0
Allow whole config loading to scripts instead of partial loading.
#81
axiomcura
opened
1 year ago
1
_path.yaml capturing empty keys
#80
axiomcura
opened
1 year ago
0
Standardize Path objects in CytoSnake with `pathlib.Path` objects.
#79
axiomcura
opened
1 year ago
1
Making CytoSnake Conda Installable.
#78
axiomcura
closed
1 year ago
1
Adding testing framework documentation
#77
axiomcura
closed
1 year ago
1
Adding Least Recently Used (LRU) caching to pathing functions
#76
axiomcura
opened
1 year ago
0
Improving Functional Test With `pytest` Fixtures
#75
axiomcura
closed
1 year ago
2
Functional Test Update with PyTest Fixures
#74
axiomcura
closed
1 year ago
1
Findings from testing cytosnake in NF1 cell painting repo
#73
gwaybio
opened
1 year ago
0
update CLI help documentation
#72
axiomcura
closed
1 year ago
0
Add supporting documents and some cleanup
#71
gwaybio
closed
1 year ago
1
Running `cytosnake` without args throws error and does not show CLI help
#70
gwaybio
closed
1 year ago
4
logo
#69
vincerubinetti
closed
1 year ago
2
Fixed API not able to be rendered in website
#68
axiomcura
closed
1 year ago
0
CytoSnake "Concepts" diagram hides black text and arrows in dark mode
#67
MattsonCam
opened
1 year ago
0
Rtd build fix
#66
axiomcura
closed
1 year ago
0
Update: Updated Documentation and Deploying Documentation to Read the Docs webpage
#65
axiomcura
closed
1 year ago
3
Cytosnake Logo
#64
gwaybio
closed
1 year ago
3
Update `get_input()` function to `get_data_path()` and implement it within modules
#63
axiomcura
closed
1 year ago
1
Create a `get_output()` helper function
#62
axiomcura
opened
1 year ago
0
Make `get_input()` function more flexible
#61
axiomcura
opened
1 year ago
0
adding `get_input()` helper function
#60
axiomcura
closed
1 year ago
1
Adding `get_input()` helper function to solve modules that can handle multiple inputs.
#59
axiomcura
closed
1 year ago
0
Adding `annotate` module in the `cp_process_singlecells` workflow
#58
axiomcura
closed
1 year ago
1
Add workflow parameters in general config file.
#57
axiomcura
opened
1 year ago
0
Update CytoTable Environment File
#56
axiomcura
closed
1 year ago
1
Develop a schema to validate configs
#55
axiomcura
opened
1 year ago
0
Make `cyto_paths` an object oriented module.
#54
axiomcura
opened
1 year ago
0
Implement `importlib_metadata` to find where `CytoSnake` is installed
#53
axiomcura
opened
1 year ago
0
Remove git dep
#52
axiomcura
closed
1 year ago
1
Create Read the docs pages for `CytoSnake`
#51
axiomcura
closed
1 year ago
0
Integrating Configs into helper functions
#50
axiomcura
closed
1 year ago
1
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