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WayScience
/
coSMicQC
Single cell Morphology Quality Control (coSMicQC)
https://wayscience.github.io/coSMicQC/
BSD 3-Clause "New" or "Revised" License
7
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3
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Avoid publishing `doctrees` files from Sphinx to prevent errors
#93
d33bs
closed
2 months ago
1
Add documentation on how to build development environment for example notebooks
#92
d33bs
closed
1 week ago
0
Use aggregate with JUMP UMAP example notebook
#91
d33bs
opened
2 months ago
0
Add UMAP colormap title for distinction among JUMP example notebook UMAP scatter plots
#90
d33bs
closed
2 months ago
0
Prevent JSON output from appearing in Jupyter notebooks when using `CytoDataFrame.show_report()`
#89
d33bs
closed
2 weeks ago
1
Add example notebook with JUMP UMAP processing
#88
d33bs
closed
2 months ago
3
Improve the visual display of information for `CytoDataFrame.show_report()` histograms
#87
d33bs
closed
2 weeks ago
1
Avoid dataframe copies to reduce memory footprint of analysis functions
#86
d33bs
opened
2 months ago
0
Add nuclear speckles data with tests
#84
d33bs
closed
2 months ago
1
CytoDataFrame single cell images don't appear within rendered Sphinx HTML docsite
#83
d33bs
closed
2 months ago
0
Fix docs logo link and customize other links
#82
d33bs
closed
2 months ago
1
Add `find_outliers` percentage of total
#81
d33bs
closed
2 months ago
2
Bump jupyterlab from 4.2.3 to 4.2.5
#80
dependabot[bot]
closed
2 months ago
0
Add support for Python 3.13
#79
d33bs
opened
3 months ago
1
Remove python 3.8 from tests
#78
d33bs
closed
2 months ago
1
Add citation reference for inspirational or reviewed efforts
#77
d33bs
opened
3 months ago
0
Clicking on docsite top left logo navigates to wrong location
#76
d33bs
closed
2 months ago
0
Add outlier percentage of total single cells for `find_outliers` output
#75
d33bs
closed
2 months ago
0
Add docsite html for base path redirection
#74
d33bs
closed
3 months ago
1
Add docsite
#73
d33bs
closed
3 months ago
2
Update contributing documentation with development recommendations
#72
d33bs
opened
3 months ago
0
Add label and identify functions to init file
#71
jenna-tomkinson
closed
3 months ago
1
`label_outliers` error
#70
jenna-tomkinson
closed
2 weeks ago
3
Verify large data handling for distribution calculations
#69
d33bs
closed
2 weeks ago
1
Update pull request template
#68
d33bs
closed
3 months ago
1
Add poster content for 2024 SBI2 conference
#67
d33bs
closed
2 months ago
3
Explore adding nuclear speckle data for testing
#66
d33bs
closed
2 months ago
0
Add JUMP data test
#65
d33bs
closed
2 months ago
1
Fix for nuclear speckle image display in CytoDataFrame
#64
d33bs
closed
3 months ago
1
Add code coverage badge through coverage.py
#63
d33bs
closed
3 months ago
1
CytoDataFrame has trouble displaying nuclear speckle datasets
#62
d33bs
closed
3 months ago
0
Update README with logo and documentation
#61
jenna-tomkinson
closed
4 months ago
1
Add test coverage data + badge to project
#60
d33bs
closed
3 months ago
0
Add CytoDataFrame segmentation mask outline capabilities for image display in notebooks
#59
d33bs
closed
4 months ago
2
YAML thresholds default file read times are slower than custom thresholds
#57
d33bs
opened
4 months ago
0
Create image masks for NF1 test data
#56
d33bs
closed
4 months ago
1
Develop `coSMicQC` poster
#55
d33bs
closed
2 months ago
1
Provide or validate capability to output histograms of distributions without outliers for use in creating or adjusting thresholds
#54
d33bs
closed
2 weeks ago
1
Logo
#53
vincerubinetti
closed
4 months ago
1
Remove unnecessary data
#52
d33bs
closed
4 months ago
1
Bump certifi from 2024.6.2 to 2024.7.4
#51
dependabot[bot]
closed
4 months ago
0
Update `SCDataFrame` name to `CytoDataFrame`
#50
d33bs
closed
4 months ago
2
Rename `SCDataFrame` to `CytoDataFrame`
#49
d33bs
closed
4 months ago
0
Enhance `CITATION.cff` reference authors content
#48
d33bs
opened
4 months ago
0
New Feature: Adding Phenotypic Response Quality Control
#47
axiomcura
closed
1 month ago
2
Update project README
#46
d33bs
closed
4 months ago
1
Add project logo
#45
d33bs
closed
4 months ago
1
Enable cropped image-based output for `.tiff` files with `SCDataFrame`
#44
d33bs
closed
4 months ago
2
Enhance report capabilities
#43
d33bs
closed
2 weeks ago
2
Provide capability for additional heuristics beyond Z-Scores
#42
d33bs
opened
4 months ago
0
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