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adnaniazi
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tailfindr
An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
https://www.cbu.uib.no/valen/
GNU General Public License v3.0
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Tails look shorter than what they should be, discrepencies tailfindR/dorado,
#71
ArnaudStigliani
closed
2 weeks ago
3
DNA primer
#70
guangzhaocs
opened
1 month ago
1
Fast5 File Accessibility
#69
ssomalra
closed
2 months ago
9
Error: CHAR() can only be applied to a 'CHARSXP', not a 'NULL'
#68
guangzhaocs
closed
3 months ago
0
0.1.0 branch questions
#67
haannguyen
opened
4 months ago
2
DNA kits
#66
dweemx
closed
5 months ago
2
fast5 format problem
#65
peipeizhang123
opened
5 months ago
1
Error in dyn.load
#64
amygu20
closed
6 months ago
0
Use of tailfindr starting from fast5 without basecalling data
#63
aduclert
closed
8 months ago
2
Error in `list_unchop()`
#62
Oscargblay
opened
9 months ago
1
Empty rna_tails.csv
#61
Aimepicornell
closed
9 months ago
4
Error in explore_basecaller_and_fast5type(fast5_files_list[1], basecall_group = basecall_group) :
#60
Aimepicornell
closed
9 months ago
4
Empty output, but HDF5_PLUGIN_PATH is set to the ONT VBZ plugin?
#59
lhkelley
opened
9 months ago
8
problems about event length calculation
#58
litao1503
opened
11 months ago
0
Very low detection rate with custom-cDNA using native barcoding LSK114
#57
patbohn
opened
11 months ago
0
Tailfindr producing NA values in output in Amazon linux 2 but producing proper output in MAC OS
#56
prabakarraj
opened
11 months ago
0
Error while relaying log message: Unterminated string starting at: line 1 column 76 (char 75)
#55
dweemx
opened
11 months ago
0
Filtering parameters for input files
#54
sq101
closed
1 year ago
2
Test file outputs
#53
sq101
closed
1 year ago
2
Cols Function
#52
Mighty-chondrias
opened
1 year ago
1
all reads invalid
#51
rgjain
closed
1 year ago
3
How to run find_tails function with multiplexed libraries
#50
KevinXu264
opened
1 year ago
9
poly a tail content
#49
sunsetyerin
closed
1 year ago
1
Warning message: `cols` is now required when using `unnest()`
#48
dr-kas
closed
1 year ago
1
No plots are created after successful run
#47
sandaruwanrat
closed
1 year ago
7
Unexpected token '--fast5_out' on command-line.
#46
xcarmengrandix
opened
1 year ago
4
Your data has been basecalled with MinKNOW
#45
ssomalra
closed
1 year ago
8
Running tailfindr on multinode HPC
#44
MustafaElshani
opened
1 year ago
5
SQK-PCB111.24 have all invalid reads
#43
MustafaElshani
closed
1 year ago
7
Gene/transcript IDs annotation support?
#42
sunsetyerin
closed
1 year ago
1
pod5 support?
#41
itslittman
opened
1 year ago
15
TailFindR completing successfully but producing empty outputs
#40
MoHeydarian-MS
closed
1 year ago
8
Missing entry in .csv output file
#39
jchang97
closed
1 year ago
2
Error in round(result$tail_length, digits = 2)
#38
jchang97
closed
1 year ago
2
Can you explain the normalization process?
#37
yeroslaviz
closed
1 year ago
1
connections fails when running find_tails
#36
yeroslaviz
closed
1 year ago
11
Error in explore_basecaller_and_fast5type with object 'model'
#35
yeroslaviz
closed
1 year ago
2
Error in f5_obj$ls
#34
MustafaElshani
closed
1 year ago
5
empty csv after analysis
#33
xcarmengrandix
closed
1 year ago
2
all reads invalid
#32
Yang990-sys
closed
1 year ago
4
Error in `[[.H5File`(f5_obj, basecaller_path)
#31
sunsetyerin
closed
1 year ago
5
Blank output when working with real data
#30
maximus-sci
closed
1 year ago
2
performance following minimal working example
#29
jon-xu
closed
1 year ago
5
cdna example fast5 not working
#28
gbouras13
closed
2 years ago
7
invalid read type and tail_is_valid FALSE
#27
jon-xu
closed
2 years ago
14
Tailfindr html plot suddenly not display
#26
manburst
closed
2 years ago
1
Tailfinder failure: Analyzing a single Fast5 file to assess if your data is in an acceptable format...
#25
Malabady
closed
2 years ago
11
Wrong read ID output when using custom cDNA adapter mode
#24
obegik
closed
2 years ago
7
Empty ggplotted plots
#23
nemitheasura
closed
2 years ago
3
Find tail and plot specific read in multi FAST5 file
#22
manburst
closed
3 years ago
1
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