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aezarebski
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timtam2
This repository is an implementation of the TimTam likelihood as a BEAST2 package.
https://aezarebski.github.io/timtam/
MIT License
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Interval terminator bug fix
#58
aezarebski
closed
1 year ago
0
`IntervalTerminator` is too eager to throw an exception
#57
aezarebski
closed
1 year ago
2
Squashed commit of the following:
#56
aezarebski
closed
1 year ago
0
Seq only template
#55
aezarebski
closed
1 year ago
0
Seq only boom bust
#54
aezarebski
closed
1 year ago
0
It is very difficult to set up a boom-bust style analysis that only uses sequence data
#53
aezarebski
closed
1 year ago
1
Create a help-me-choose page for timtam
#52
aezarebski
opened
1 year ago
0
Broken XML example files
#51
aezarebski
closed
1 year ago
1
Candidate
#50
aezarebski
closed
1 year ago
0
bring 2.6 dev branch up to date with main
#49
aezarebski
closed
1 year ago
0
The documentation for the time series based parameterisation is terrible
#48
aezarebski
opened
1 year ago
0
Tutorial with SIR needs to be updated
#47
aezarebski
closed
1 year ago
0
Squashed commit of the following:
#46
aezarebski
closed
2 years ago
0
Candidate
#45
aezarebski
closed
2 years ago
0
Use the tMRCA instead of the origin
#44
aezarebski
opened
2 years ago
0
Use a more natural parameterisation as done by `bdsky`
#43
aezarebski
closed
2 years ago
1
Tutorial 3: prevalence curve
#42
xieruopeng
closed
2 years ago
4
There should be a check that the parameter dimensions are correct
#41
aezarebski
closed
2 years ago
2
Allow `yyyy-mm-dd` formatted dates
#40
aezarebski
closed
1 year ago
2
Example where a rate parameter is set to zero for an interval of time
#39
aezarebski
opened
2 years ago
0
Tutorial 2 does not make use of BEAUti yet
#38
aezarebski
closed
2 years ago
2
Beauti template
#37
aezarebski
closed
2 years ago
0
unclear if this package will work with v2.7
#36
aezarebski
closed
1 year ago
0
trying to set-up a xml for sars-cov-2 (december january)
#35
babarlelephant
opened
2 years ago
1
Origin height bug
#34
aezarebski
closed
2 years ago
0
originTime closer to the present than the height of the tree
#33
aezarebski
closed
2 years ago
1
Varying rho
#32
aezarebski
closed
2 years ago
0
Merge helper
#31
aezarebski
closed
2 years ago
0
Ex3
#30
aezarebski
closed
2 years ago
0
Use MASTER or remaster to generate the simulated datasets
#29
aezarebski
closed
2 years ago
2
Arrays
#28
aezarebski
closed
2 years ago
0
Arrays
#27
aezarebski
closed
2 years ago
0
build won't work without `lib` directory
#26
aezarebski
closed
2 years ago
1
Ant attempt
#25
aezarebski
closed
2 years ago
0
Vignettes
#24
xieruopeng
closed
2 years ago
1
Skyline uptodate
#23
aezarebski
closed
2 years ago
0
Beauti again
#22
aezarebski
closed
2 years ago
0
add missing build file
#21
aezarebski
closed
2 years ago
0
Refactor
#20
aezarebski
closed
2 years ago
0
Vig est tree w rho
#19
aezarebski
closed
2 years ago
0
Re vig 2
#18
aezarebski
closed
2 years ago
0
Update ape sim v1
#17
aezarebski
closed
2 years ago
0
Re vig 1
#16
aezarebski
closed
2 years ago
0
Multi nu
#15
aezarebski
closed
2 years ago
0
Nu sample
#14
aezarebski
closed
2 years ago
0
Omega zero
#13
aezarebski
closed
2 years ago
0
Est tree no rho again
#12
aezarebski
closed
2 years ago
0
Beauti template
#11
aezarebski
closed
2 years ago
0
Operators
#10
aezarebski
closed
2 years ago
0
scale operator is not working
#9
aezarebski
closed
2 years ago
2
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