airr-community rep-cred issues

airr-community / rep-cred

SW Tools Group - Repertoire Credibility Tool

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issues

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change R package installation method in the container

#43 ssnn-airr closed 4 months ago
3
rename repo and docker container from rep-cred to repcred

#42 ssnn-airr opened 4 months ago
0
Recpred suggestions

#41 bcorrie opened 7 months ago
0
One more round of testing: T1D benchmark test

#40 bcorrie opened 7 months ago
1
Repcred testing - performance on IGH

#39 bcorrie opened 7 months ago
4
Fix warning "Node.js 16 actions are deprecated"

#38 ssnn-airr closed 7 months ago
1
Repcred runs out of memory

#37 bcorrie opened 7 months ago
8
Generate mark down error

#36 bcorrie closed 7 months ago
2
Repcred testing - performance benchmarking

#35 bcorrie opened 7 months ago
1
Repcred PDF report is not very pretty...

#34 bcorrie opened 7 months ago
0
Repcred testing - Healthy Controls

#33 bcorrie closed 7 months ago
2
repcred crashes with non-negative sequence length error.

#32 bcorrie closed 7 months ago
14
update docs to fix @docType deprecation

#31 ssnn-airr opened 8 months ago
2
Test study_id = PRJNA731610

#30 bcorrie closed 9 months ago
1
Test study_id = E-MTAB-9995

#29 bcorrie closed 7 months ago
5
repcred error on gene call frequency?

#28 bcorrie closed 7 months ago
2
repcred failure on processing alleles

#27 bcorrie closed 7 months ago
7
repcred failure with empty sequence_alignment

#26 bcorrie closed 7 months ago
4
Add to `repcred.R` the option to use germline reference set

#25 ssnn-airr opened 9 months ago
0
Add the option to output the report as a pdf

#24 ssnn-airr closed 7 months ago
4
review reactivity, run only when 'Test Repertoire' clicked on.

#23 ssnn-airr opened 1 year ago
0
Optional downsampling of rep for speed of report

#22 noahyannlee closed 2 years ago
0
Create container

#21 ssnn-airr opened 2 years ago
0
Stop processing if the repertoire file is not AIRR-C compliant

#20 ssnn-airr closed 2 years ago
1
Make it easy to share reports

#19 williamdlees opened 2 years ago
0
Full reports take a long time to run

#18 williamdlees opened 2 years ago
1
Extended reports errored out

#17 williamdlees opened 2 years ago
0
Warnings and errors are not always reflected in the UI

#16 williamdlees opened 2 years ago
1
Parsing issues

#15 williamdlees opened 2 years ago
0
Use of the germline set, and error when it is provided

#14 williamdlees opened 2 years ago
0
Grey out unavailable sections in report contents

#13 williamdlees opened 2 years ago
0
Improve non-nucleotides in sequence report

#12 williamdlees opened 2 years ago
0
Quality control stats

#11 williamdlees opened 2 years ago
0
Input parameters are not provided in the report

#10 williamdlees closed 8 months ago
2
Error when re-running an analysis

#9 williamdlees closed 2 years ago
2
Commenting and report changes.

#8 GeorginaLeslie closed 2 years ago
0
Near final repcred code

#7 GeorginaLeslie closed 3 years ago
0
set up Travis CI

#6 ssnn-airr closed 4 years ago
3
Add CONTRIBUTING

#5 ssnn-airr opened 4 years ago
0
Add usage examples to vignettes

#4 ssnn-airr opened 4 years ago
0
Create Introduction for Vignette

#3 ssnn-airr opened 4 years ago
0
Set up Read the Docs

#2 ssnn-airr opened 4 years ago
7
Add to README text describing the goals of the package

#1 ssnn-airr opened 4 years ago
0