alexstaj cutadapt issues

alexstaj / cutadapt

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trouble installing/compiling cutadapt

#99 GoogleCodeExporter closed 9 years ago
11
[Feature Request] Quality trim both ends of a read

#98 GoogleCodeExporter closed 9 years ago
5
option to remove reads that fail the Casava filter

#97 GoogleCodeExporter opened 9 years ago
4
unrecognized gcc option '-fstack-protector-strong'

#96 GoogleCodeExporter closed 9 years ago
3
length of quality sequence and length of read do not match

#95 GoogleCodeExporter closed 9 years ago
3
Add found adapter as comment to output FASTA/FASTQ

#94 GoogleCodeExporter opened 9 years ago
0
Normal runtime for cutadapt

#93 GoogleCodeExporter closed 9 years ago
6
Restrict -g matching to certain parts of the read

#92 GoogleCodeExporter opened 9 years ago
0
cutadapt-1.7 build fails

#91 GoogleCodeExporter closed 9 years ago
4
Illumina 1.8+ header support

#90 GoogleCodeExporter closed 9 years ago
1
Statistics are zero when --no-trim is used

#89 GoogleCodeExporter opened 9 years ago
0
Allow unconditional cutting from both ends at the same time

#88 GoogleCodeExporter closed 9 years ago
1
anchored adapters from file

#87 GoogleCodeExporter closed 9 years ago
19
Sequence and quality different lengths

#86 GoogleCodeExporter closed 9 years ago
2
info-file: untrimmed reads do not show

#85 GoogleCodeExporter opened 9 years ago
1
ImportError: No module named cutadapt.scripts

#84 GoogleCodeExporter closed 9 years ago
3
Allow IUPAC ambiguities in adapter

#83 GoogleCodeExporter closed 9 years ago
1
Trim both reads at same time

#82 GoogleCodeExporter opened 9 years ago
1
Anchor three-prime adapter

#81 GoogleCodeExporter closed 9 years ago
3
improve documentation regarding the trimming algorithm and output files

#80 GoogleCodeExporter closed 9 years ago
5
On occasions will produce corrupt gzip files

#79 GoogleCodeExporter closed 9 years ago
10
cutadapt 1.5: -f not recognized in paired trimming mode

#78 GoogleCodeExporter closed 9 years ago
1
Format option ignored occasionally in 1.5

#77 GoogleCodeExporter closed 9 years ago
2
adapters from fasta file

#76 GoogleCodeExporter closed 9 years ago
1
make -z default

#75 GoogleCodeExporter closed 9 years ago
1
Trim fixed number of bases from 5' end

#74 GoogleCodeExporter closed 9 years ago
7
Compilation fails under CentOS 6.5

#73 GoogleCodeExporter closed 9 years ago
7
Installed v1.3.1, got v1.2.1

#72 GoogleCodeExporter closed 9 years ago
2
Trim adapter error

#71 GoogleCodeExporter closed 9 years ago
5
Patch for /trunk/README

#70 GoogleCodeExporter closed 9 years ago
1
trimm adapter only from beginning does not work correctly

#69 GoogleCodeExporter closed 9 years ago
2
cutadapt does something unexpected when i provide a 5' and a 3' adapter sequence

#68 GoogleCodeExporter opened 9 years ago
2
input fastq.gz error

#67 GoogleCodeExporter closed 9 years ago
2
Allow a fasta file with multiple adapters

#66 GoogleCodeExporter closed 9 years ago
1
ImportError:No module named cutadapt.scripts

#65 GoogleCodeExporter closed 9 years ago
10
Some fastq.gz files cause cutadapt.fastq.gz to have unexpected EOF error

#64 GoogleCodeExporter closed 9 years ago
2
not able to remove adapter from sequece

#63 GoogleCodeExporter closed 9 years ago
3
distinguish multiple adapters

#62 GoogleCodeExporter closed 9 years ago
8
Change between 1.0 and 1.2.1: Ungreedy adapter cutting

#61 GoogleCodeExporter closed 9 years ago
7
stdout and stderr not treated consistently

#60 GoogleCodeExporter closed 9 years ago
4
Returns true on some failures

#59 GoogleCodeExporter closed 9 years ago
1
I'd like to be able to trim partial adapter sequence from the 5' end as happens with the 3' end. Is that possible?

#58 GoogleCodeExporter closed 9 years ago
3
Bug in cutadapt v1.2.1 - does not report Mb correctly

#57 GoogleCodeExporter closed 9 years ago
1
program fails to write --rest-file when --overlap is sufficiently long

#56 GoogleCodeExporter closed 9 years ago
6
Cutadapt value error

#55 GoogleCodeExporter closed 9 years ago
3
optional trimming

#54 GoogleCodeExporter closed 9 years ago
3
FastQ conversion solid quality of "."-> " "

#53 GoogleCodeExporter closed 9 years ago
4
Using --wildcard-file results in "IndexError: string index out of range" error

#52 GoogleCodeExporter closed 9 years ago
7
Not removing adapters properly

#51 GoogleCodeExporter closed 9 years ago
2
Paired-end trimming

#50 GoogleCodeExporter closed 9 years ago
2