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artic-network
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fieldbioinformatics
The ARTIC field bioinformatics pipeline
MIT License
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adding an amplicon depth plot
#33
will-rowe
closed
4 years ago
12
nanopolish v0.13.2
#32
jts
closed
4 years ago
0
Edge where N being called instead of reference bp
#31
Takadonet
opened
4 years ago
8
bump nanopolish to 0.13.1
#30
jts
closed
4 years ago
0
Add multiprocessing capability to guppyplex
#29
MarkusHaak
opened
4 years ago
0
fix https://github.com/artic-network/artic-ncov2019/issues/29
#28
nickloman
closed
4 years ago
0
Not seeing default argument values in pipeline.py
#27
jbeaulaurier
closed
3 years ago
1
Add --no-indels option to artic minion
#26
nickloman
closed
4 years ago
0
Updating CLI docs
#25
will-rowe
closed
4 years ago
0
Please port to Python3
#24
M-Artemisia
closed
4 years ago
5
update envs, tests and add argparse to margin_cons.py
#23
will-rowe
closed
4 years ago
0
Fix issue #21 - if a variant passes in one pool and fails in another,…
#22
nickloman
closed
4 years ago
1
Longshot VCF causing bcftools to crash
#21
Mattstorey
closed
4 years ago
3
Fix for the InDel dropping behaviour during consensus masking
#20
will-rowe
closed
4 years ago
0
add align_trim_n functionality to align_trim
#19
will-rowe
opened
4 years ago
0
softmask improvements
#18
will-rowe
closed
4 years ago
0
inclusion of gzip import in guppyplex target
#17
sagrudd
closed
4 years ago
2
v1.0.1-rc
#16
nickloman
closed
4 years ago
0
fixing vcf parse warning - no pool in header info
#15
will-rowe
closed
4 years ago
0
repo tidy
#14
will-rowe
closed
4 years ago
0
requirements.txt
#13
will-rowe
closed
4 years ago
0
fixing type error
#12
will-rowe
closed
4 years ago
0
adding checks to the primer scheme processing, now using pandas
#11
will-rowe
closed
4 years ago
0
fix for quality filter logic flip - apologies
#10
sagrudd
closed
4 years ago
2
Tidying up and, some additional error handling and minor fixes.
#9
will-rowe
closed
4 years ago
0
adding functional testing
#8
will-rowe
closed
4 years ago
1
Primer site tagging
#7
will-rowe
closed
4 years ago
0
Streamline nanopolish indexing
#6
jts
closed
4 years ago
0
Support for Guppy-based demultiplexing
#5
sagrudd
closed
4 years ago
6
MinKNOW sequencing_summary filenames
#4
sagrudd
closed
4 years ago
1
Medaka
#3
sagrudd
closed
4 years ago
4
fix typo in logical false -> False
#2
sagrudd
closed
4 years ago
1
python 2to3 changes
#1
ColinAnthony
closed
4 years ago
1
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