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ashander
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ftprime
Forward-time simulation of the msprime data structure (for development)
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Add mutations
#65
petrelharp
closed
5 years ago
3
New msprime
#64
petrelharp
closed
5 years ago
2
convert to newer msprime dump_tables() calling convention
#63
hyanwong
closed
5 years ago
2
selective_sweep code now working
#62
hyanwong
closed
5 years ago
2
Add mutations (again)
#61
ashander
closed
5 years ago
7
Cleanup
#60
ashander
closed
6 years ago
1
do example of retaining ancestral state
#59
petrelharp
opened
6 years ago
8
Investigating possible memory leak
#58
ashander
opened
6 years ago
2
Use add_individuals and add_records with recomb collector
#57
ashander
closed
6 years ago
1
concurrent simplify?
#56
ashander
opened
6 years ago
3
change to numpy arrays
#55
ashander
closed
6 years ago
10
Add tree tests to ftprime
#54
ashander
closed
6 years ago
6
Use of logging in example code
#53
ashander
opened
6 years ago
1
Complexity of examples
#52
ashander
opened
6 years ago
4
Add random seed to example script
#51
ashander
closed
6 years ago
0
Example to discuss initial trees behavior
#50
ashander
opened
6 years ago
2
Add recombination map to initial ts in examples
#49
ashander
opened
6 years ago
3
Selective sweep example
#48
hyanwong
closed
6 years ago
74
Add examples
#47
ashander
closed
6 years ago
0
make sequence_length override ts.sequence_length in argrecoder init
#46
petrelharp
closed
6 years ago
8
Revisit / document the behavior `.sequence_length` attribute
#45
ashander
closed
6 years ago
1
Fix/upgrade edgesets edges
#44
ashander
closed
6 years ago
12
update to include map_samples
#43
petrelharp
opened
6 years ago
1
Tests with overlapping gens
#42
ashander
closed
6 years ago
1
Switch to append_columns method for adding records
#41
ashander
opened
6 years ago
0
added tables input to argrecorder
#40
petrelharp
closed
7 years ago
1
change __init__ to take tables instead of `ts`
#39
petrelharp
closed
7 years ago
2
remove unneeded messing around with `flags` in ARGrecorder
#38
petrelharp
closed
7 years ago
1
Remove 'unit' from coverage target and lower cov goal
#37
ashander
closed
7 years ago
1
unify interface to updating ARGRecorder in __call__
#36
ashander
closed
6 years ago
1
revisit hacks like phony_samples if simplify is changed to work on tables
#35
petrelharp
closed
6 years ago
0
Switch to new simplify
#34
petrelharp
closed
7 years ago
6
change to output without merge_records
#33
petrelharp
closed
6 years ago
1
document simupop usage
#32
petrelharp
closed
7 years ago
1
allow >1 chromosome in recomb collector
#31
petrelharp
opened
7 years ago
2
determine where bottlenecks are in RecombCollector
#30
ashander
opened
7 years ago
1
Poisson recombination in RecombCollector
#29
petrelharp
opened
7 years ago
0
Simpler config to avoid upload of coverage w/ failing test
#28
ashander
closed
7 years ago
2
Improve tests for use with simuPOP
#27
ashander
closed
7 years ago
1
removed samples from the slots 0...n-1 as in msprime:generalise-samples
#26
petrelharp
closed
7 years ago
8
profiling (don't merge!)
#25
ashander
opened
7 years ago
2
do simplify() in steps
#24
petrelharp
closed
6 years ago
11
Expanded unit tests for argrecorder
#23
ashander
closed
7 years ago
2
Add test with overlapping generations
#22
ashander
closed
7 years ago
2
tentative timekeeping
#21
ashander
closed
7 years ago
1
Add numpy to fix NodeTable().time issue
#20
ashander
closed
7 years ago
0
Deal with overlapping generations
#19
ashander
closed
7 years ago
2
Test failure on CI
#18
ashander
closed
7 years ago
6
Get more tests
#17
ashander
closed
7 years ago
0
Update enviornment.yml to latest msprime
#16
ashander
closed
7 years ago
1
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