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astheeggeggs
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lshmm
code to run Li and Stephens
MIT License
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Fix get examples for diploid case
#44
szhan
closed
1 month ago
5
Fix get_examples_diploid in tests
#43
szhan
closed
1 month ago
0
Add tests for no scaling mutation rate for the haploid case
#42
szhan
closed
1 month ago
2
Implement NONCOPY for both the haploid and diploid cases
#41
szhan
closed
1 month ago
5
Handle NONCOPY in reference panel
#40
szhan
closed
1 month ago
2
Scale mutation rate based on the number of alleles for the diploid case
#39
szhan
closed
1 month ago
2
Handle MISSING properly in the diploid case
#38
szhan
closed
1 month ago
1
Refactor
#37
szhan
closed
2 months ago
15
Simplify CI setup
#36
jeromekelleher
closed
2 months ago
3
Actions: Preparing metadata (pyproject.toml) did not run successfully
#35
szhan
closed
2 months ago
6
Exclude MISSING when counting alleles per site
#34
szhan
closed
2 months ago
2
MISSING as a distinct allele?
#33
szhan
closed
2 months ago
3
Discrepant pointer matrices from `forwards_viterbi_hap_naive_low_mem_rescaling` and `forwards_viterbi_hap_low_mem_rescaling`
#32
szhan
closed
3 months ago
1
Modify haploid Viterbi/FB to handle NONCOPY state in reference panel
#31
szhan
closed
1 month ago
14
added version
#30
astheeggeggs
closed
11 months ago
1
bump version and push to pypi
#29
astheeggeggs
closed
11 months ago
0
removed all sample x variant implementations and tests
#28
astheeggeggs
closed
11 months ago
0
updated rate to commit where appropriate
#27
astheeggeggs
closed
11 months ago
0
remove reference to rates unless they are actually rates
#26
astheeggeggs
closed
11 months ago
0
0.0.5 release?
#25
jeromekelleher
closed
11 months ago
1
Remove unused modules?
#24
jeromekelleher
closed
11 months ago
0
Fix installing tests error
#23
jeromekelleher
closed
11 months ago
2
Looks like the ``tests`` directory gets installed
#22
jeromekelleher
closed
11 months ago
0
Module has no __version__ attribute
#21
jeromekelleher
closed
11 months ago
2
lshmm.forwards has print statements
#20
jeromekelleher
closed
11 months ago
4
Refactor checks in `api.py`
#19
szhan
closed
1 year ago
5
If statement checking size of `recombination_rate` array
#18
szhan
closed
1 year ago
3
`num_random` param not used
#17
hyanwong
closed
1 year ago
1
Missingness
#16
astheeggeggs
closed
1 year ago
3
Remove prints and turn on numba caching
#15
jeromekelleher
closed
1 year ago
5
Remove prints within public API calls
#14
jeromekelleher
closed
1 year ago
0
fixed initial lint error
#13
astheeggeggs
closed
1 year ago
1
Better high-level interface
#12
jeromekelleher
closed
2 months ago
6
Support multiple alleles
#11
jeromekelleher
opened
2 years ago
2
Check distribution builds
#10
jeromekelleher
closed
2 years ago
1
Make CI pass
#9
jeromekelleher
closed
12 months ago
0
Api first pass
#8
jeromekelleher
closed
2 years ago
5
Create LICENCE
#7
astheeggeggs
closed
2 years ago
0
Remove msprime dependency
#6
jeromekelleher
closed
2 years ago
4
External API
#5
jeromekelleher
closed
2 years ago
3
Remove src dir
#4
jeromekelleher
closed
2 years ago
1
Remove references to Hail
#3
jeromekelleher
closed
2 years ago
1
Licences inconsistent
#2
jeromekelleher
closed
2 years ago
2
Rename to lshmm?
#1
jeromekelleher
closed
2 years ago
1
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