issues
search
bcgsc
/
ntEdit
✏️ Genome assembly polishing & SNV detection
GNU General Public License v3.0
64
stars
9
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Specify read files not on CWD
#72
fgvieira
opened
1 week ago
2
Prepare for release v2.1.0
#71
lcoombe
closed
1 week ago
0
Use ntStat in ntEdit
#70
lcoombe
closed
1 week ago
1
Fix CI - pin python version for ubuntu
#69
lcoombe
closed
4 weeks ago
0
Fix macOS CI
#68
lcoombe
closed
1 month ago
0
Prepare for release v2.0.3
#67
lcoombe
closed
2 months ago
0
Avoid use of single-character parameters to snakemake file
#66
lcoombe
closed
2 months ago
0
why snakemake error showing up when executing polish workflow
#65
akshaydinesh26
closed
2 months ago
3
Update ntedit.cpp
#64
warrenlr
closed
6 months ago
2
Update README.md
#63
warrenlr
closed
7 months ago
0
Allow -l to be used in polish mode
#62
lcoombe
closed
7 months ago
0
Fix the ntedit base insertion(s) and deletion(s) output VCF and added support to natively cross-reference indels within ntedit
#61
warrenlr
closed
7 months ago
1
rebasing cross-reference_indels branch
#60
warrenlr
closed
7 months ago
0
Fix usage of fasta files for --reads, remove bg and zip as supported
#59
lcoombe
closed
7 months ago
0
Cross reference against vcf, if provided, when variant has lower allelic depth than draft
#58
jwcodee
closed
7 months ago
0
Revert "Allow -i and -d to be set in SNV mode"
#57
lcoombe
closed
7 months ago
0
Short variant detection with --genome option
#56
asan-emirsaleh
closed
5 months ago
1
Allow -i and -d to be set in SNV mode
#55
lcoombe
closed
7 months ago
0
Prepare for release v2.0.1
#54
lcoombe
closed
7 months ago
0
Change argument --draft in SNV mode to --reference
#53
lcoombe
closed
7 months ago
0
Update README.md
#52
warrenlr
closed
7 months ago
0
final change for ntedit2
#51
jwcodee
closed
7 months ago
0
Bugfix from GoldPolish
#50
lcoombe
closed
8 months ago
0
Rename make_genome_bf --> ntedit_make_genome_bf; update meson build
#49
lcoombe
closed
8 months ago
0
Update run-ntedit
#48
lcoombe
closed
8 months ago
0
definition of solid with a CBF
#47
warrenlr
closed
8 months ago
0
ntEdit2
#46
jwcodee
closed
7 months ago
3
Replace ntHash dependency with btllib
#45
parham-k
closed
10 months ago
0
ntHash from btllib
#44
parham-k
closed
10 months ago
0
Allow zipped vcf as input
#43
jwcodee
closed
11 months ago
0
counting Bloom filter with ntEdit
#42
jwcodee
closed
11 months ago
4
Add mac CI, fix to ntedit compile on mac
#41
lcoombe
closed
1 year ago
0
Specify ntHits version, fix CI
#40
lcoombe
closed
1 year ago
1
ntEdit for self-correction of long reads
#25
shelkmike
closed
2 years ago
2
Add stalebot, updates to CI
#24
lcoombe
closed
3 years ago
0
Indeterministic behavior of ntEdit
#23
shelkmike
closed
3 years ago
2
Add X, Y, s parameters to ntedit-make
#22
lcoombe
closed
3 years ago
1
Add a and j parameters to ntedit-make
#21
lcoombe
closed
3 years ago
0
ntEdit for assemblies with really high error rates
#20
shelkmike
closed
3 years ago
4
How much does a short read assembly benefit from ntEdit
#19
ms-gx
closed
3 years ago
2
No IUPAC corrections after -s 1 mode
#18
sihellem
closed
3 years ago
7
VCF output inconsistencies
#17
warrenlr
closed
3 years ago
4
Vcf
#16
jwcodee
closed
4 years ago
2
Can ntEdit remove haplotype redundance?
#15
xiekunwhy
closed
4 years ago
3
ntEdit std::bad_alloc
#14
cbirbes
closed
4 years ago
4
adding a --target option to partially polishing a genome
#13
chklopp
closed
4 years ago
1
ntEdit on SNPs
#12
dcopetti
closed
5 years ago
2
Add azure pipeline
#11
MurathanGoktas
closed
5 years ago
1
cutoff error check added
#10
MurathanGoktas
closed
5 years ago
1
Add makefile, azure-pipelines.yml
#9
MurathanGoktas
closed
5 years ago
3
Next