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bcgsc
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ntSynt
Detecting multi-genome synteny using minimizer graph mapping
GNU General Public License v3.0
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How to adjust the -k and -w for multiple genome synteny analysis?
#47
xxllgg
opened
6 days ago
2
Parameters for detecting small-scale intra-species synteny?
#46
zhaotao1987
closed
1 month ago
3
Problem to install ntsynt with conda
#45
Enorya
closed
1 month ago
3
Adjustments to ribbon plots R script
#44
lcoombe
closed
2 months ago
0
Singularity container creation
#43
KristinaGagalova
closed
2 months ago
3
ntSynt installation
#42
Yunxiao-web
closed
2 months ago
3
Prepare for release v1.0.1
#41
lcoombe
closed
2 months ago
0
Fixes for gggenomes visualization scripts
#40
lcoombe
closed
3 months ago
0
Update README.md - tip for estimating sequence divergences
#39
lcoombe
closed
3 months ago
0
Add --fastas_list to ntSynt
#38
lcoombe
closed
3 months ago
0
Update btllib
#37
lcoombe
closed
3 months ago
0
Computing synteny blocks between four genomes - missing links in ribbon plot
#36
mariamadrid19
closed
3 months ago
6
Update analysis scripts
#35
lcoombe
closed
4 months ago
0
Add biorxiv citation
#34
lcoombe
closed
5 months ago
0
Update README.md with conda install instructions
#33
lcoombe
closed
5 months ago
0
Update README.md - Add releases badge
#32
lcoombe
closed
5 months ago
0
Prepare for release v1.0.0
#31
lcoombe
closed
5 months ago
0
Improvements to driver scripts for ntSynt
#30
lcoombe
closed
5 months ago
0
Add check for no paths found
#29
lcoombe
closed
5 months ago
0
Update ribbon plots approach to allow for specified genome order
#28
lcoombe
closed
5 months ago
0
Update visualization example images
#27
lcoombe
closed
6 months ago
0
Update README.md
#26
lcoombe
closed
6 months ago
0
Add new example images, tweaks to documentation and script naming
#25
lcoombe
closed
6 months ago
0
Add chromosome paint plots scripts and instructions
#24
lcoombe
closed
6 months ago
0
Add gggenomes example script
#23
lcoombe
closed
6 months ago
0
Add table of contents to README
#22
lcoombe
closed
7 months ago
0
Update ntJoin subproject, update README.md
#21
lcoombe
closed
8 months ago
0
Rename solid BF to common BF
#20
lcoombe
closed
8 months ago
0
Update README
#19
lcoombe
closed
8 months ago
0
Add de novo analysis script
#18
lcoombe
closed
8 months ago
0
Fix error with empty interval list, rename ntSynt.py to ntSynt, Bugfixes
#17
lcoombe
closed
9 months ago
0
Add divergence parameter with defaults
#16
lcoombe
closed
9 months ago
0
Add additional round of merging
#15
lcoombe
closed
9 months ago
0
Fix orientation bug when merging collinear
#14
lcoombe
closed
9 months ago
0
Fix seqtk in/output files
#13
lcoombe
closed
9 months ago
0
Make block sorting consistent throughout ntSynt
#12
lcoombe
closed
9 months ago
0
Fix error sometimes seen after bedtools maskfasta
#11
lcoombe
closed
9 months ago
0
Add reasons for block breaking in the output synteny TSV file
#10
lcoombe
closed
9 months ago
0
change --w-rounds default to 100 10
#9
lcoombe
closed
10 months ago
0
Fix bug when extending minimizer graph using w < k
#8
lcoombe
closed
1 year ago
0
Update default number of threads to 12
#7
lcoombe
closed
1 year ago
0
Add some grace for overlapping synteny blocks
#6
lcoombe
closed
1 year ago
0
Add threads to snakemake, allow parallel jobs to be launched within thread limit
#5
lcoombe
closed
1 year ago
0
Add OPENMP parallelization to BF population
#4
lcoombe
closed
1 year ago
0
Change types to prevent number overflow
#3
lcoombe
closed
1 year ago
0
Rename final synteny block output, tweak collinear merging
#2
lcoombe
closed
1 year ago
0
Set up CI with Azure Pipelines
#1
lcoombe
closed
1 year ago
0