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biocore
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metagenomics_pooling_notebook
Jupyter notebooks to assist with sample processing
MIT License
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ENH: Change column names for count collector
#37
ElDeveloper
closed
2 years ago
1
re Issue #23: adds fields for library_construction_protocol and experiment_design_description
#36
ahdilmore
closed
2 years ago
7
Collect sequence counts during prep file generation
#35
ElDeveloper
closed
2 years ago
1
Explore the feasibility of porting notebooks to use Jupyter widgets
#34
ElDeveloper
opened
2 years ago
0
Add some dependencies in the conda environment
#33
ElDeveloper
closed
2 years ago
0
Revert "Add support for parsing sample sheets with empty lines"
#32
charles-cowart
closed
2 years ago
2
Update README installation instructions to recommend conda for dependencies with binaries
#31
ElDeveloper
closed
2 years ago
1
Tag a release
#30
ElDeveloper
opened
2 years ago
0
Add support for 18S and ITS in amplicon-pooling.ipynb
#29
ElDeveloper
closed
2 years ago
0
Update metapool.prep.preparations_for_run to work with 16S data
#28
ElDeveloper
opened
2 years ago
0
Cleanup iTru index combo generator
#27
ElDeveloper
opened
2 years ago
2
Add gDNA concentration check (dilution) function
#26
RodolfoSalido
closed
1 year ago
1
Add test data for all notebooks
#25
ElDeveloper
closed
7 months ago
0
Move notebooks and test data to a different directory.
#24
ElDeveloper
closed
7 months ago
0
Add a field for library_construction_protocol and experiment_design_description
#23
ElDeveloper
closed
2 years ago
1
Change read_plate_map_csv to fail with repeated sample names
#22
ElDeveloper
closed
2 years ago
0
Add support for parsing sample sheets with empty lines
#21
ElDeveloper
closed
2 years ago
3
Add new plate reader compatibility. Update REVCOMP_SEQUENCERS
#20
RodolfoSalido
closed
2 years ago
1
Code review comments
#19
ElDeveloper
closed
2 years ago
2
ENH: Add watermark to notebooks
#18
ElDeveloper
closed
2 years ago
2
ENH: Add versioneer to project
#17
ElDeveloper
closed
2 years ago
2
Improve IGM Manifest code
#16
ElDeveloper
closed
2 years ago
1
ENH: Add bcl2fastq scrubbing for project names
#15
ElDeveloper
closed
3 years ago
1
ENH: Add a warning when we find comments
#14
ElDeveloper
closed
3 years ago
3
Manifests part 2(?)
#13
ElDeveloper
closed
3 years ago
2
Add the ability to write IGM's manifest files
#12
ElDeveloper
closed
3 years ago
0
Post review fixes
#11
ElDeveloper
closed
3 years ago
3
Create a new API for dealing with sample sheets
#10
ElDeveloper
closed
3 years ago
3
ENH: Add zero-padding for AGP sample names
#9
ElDeveloper
closed
3 years ago
2
Additional review changes
#8
ElDeveloper
closed
3 years ago
4
STY: Flake8tify the codebase
#7
ElDeveloper
closed
3 years ago
8
Add prep and sample sheet generation for amplicon data
#6
ElDeveloper
closed
3 years ago
3
Enable flake8
#5
ElDeveloper
closed
3 years ago
0
Generate preparation files from sample sheets
#4
ElDeveloper
closed
3 years ago
4
Add sample sheet validation
#3
ElDeveloper
closed
3 years ago
4
Fixing GitHub actions for CI
#2
ElDeveloper
closed
3 years ago
2
MAINT: Add github actions CI
#1
ElDeveloper
closed
3 years ago
0
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