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biona001
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GhostKnockoffGWAS
Knockoff-based analysis of GWAS summary statistics data
MIT License
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"small" binary
#36
biona001
opened
4 weeks ago
0
Improve LD shrinkage efficiency
#35
biona001
closed
1 month ago
2
update download links in doc to v0.2.2
#34
biona001
closed
2 months ago
0
CompatHelper: add new compat entry for HDF5 at version 0.17, (keep ex…
#33
biona001
closed
2 months ago
0
Fix infinite loop in unit tests
#32
biona001
closed
2 months ago
1
Fix CI
#31
biona001
closed
2 months ago
0
fix CI
#30
biona001
closed
2 months ago
0
PLINK support
#29
biona001
closed
2 months ago
0
Custom Reference Panel in PLINK Format
#28
AFSHINJAM
closed
2 months ago
3
Tutorial for `solveblock`
#27
biona001
opened
3 months ago
0
ERROR: id is missing
#26
biona001
closed
3 months ago
0
consider the case when VCF file contain multiple chr
#25
biona001
closed
3 months ago
0
Chech chr
#24
biona001
closed
3 months ago
1
Explicitly check `CHROM` field is Int
#23
biona001
closed
3 months ago
0
`manhattan.R` does not work on output of `solveblock`
#22
biona001
closed
3 months ago
0
Optimize VCF reading time
#21
biona001
opened
3 months ago
0
`solveblock`: matrix contains Infs or NaNs
#20
biona001
closed
3 months ago
0
`solveblock` throws crazy error when no SNPs is between `start_bp` and `end_bp`
#19
biona001
closed
3 months ago
0
Roadmap for v0.2.0 release
#18
biona001
closed
3 months ago
1
Using your method with our data
#17
Ennazhou
opened
3 months ago
6
Set `random-shuffle=false` by default
#16
biona001
closed
3 months ago
0
Docs for `solve_blocks()`
#15
biona001
closed
3 months ago
0
Improve coverage
#14
biona001
closed
2 months ago
0
Export `solve_blocks` for creating `.h5` formatted LD files
#13
biona001
closed
3 months ago
0
VCF: run `solve_blocks()` on typed SNPs only
#12
biona001
opened
3 months ago
0
Parse LD files with either hg19 or hg38, but not both
#11
biona001
closed
3 months ago
0
Drop JLD2.jl in favor of forked HDF5.jl
#10
biona001
closed
6 months ago
1
wget `example_zfile.txt` broken
#9
biona001
closed
6 months ago
0
Error in CMplot
#8
biona001
closed
6 months ago
0
FileIO error
#7
biona001
closed
6 months ago
2
manhattan plots not utilizing within-group knockoff filter
#6
biona001
closed
7 months ago
0
very slow manhattan plots
#5
biona001
closed
7 months ago
1
Non-linux support?
#4
biona001
opened
7 months ago
0
Improve documentation
#3
biona001
opened
7 months ago
0
Within group knockoff filter
#2
biona001
closed
7 months ago
1
Roadmap until 1.0 release
#1
biona001
closed
7 months ago
0