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break-through-cancer
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btc-spatial-pipelines
Nextflow spatial pipelines (for Spatial Transcriptomics, IMC, etc.)
MIT License
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Allow Specifying scRNA Reference Data in Anndata Format, Allow Adjusting Gene Filtering Params
#39
jeffquinn-msk
opened
1 day ago
3
add CoGAPS NMF
#38
dimalvovs
opened
1 day ago
0
standalone SpaceMakers and CoGAPS module
#37
dimalvovs
opened
1 day ago
2
Change number of genes for filter_genes as a pipeline input parameter.
#36
atuldeshpande
opened
2 days ago
0
update spacemarkers container to main
#35
dimalvovs
closed
3 weeks ago
1
add option to run deconvolution with reference
#34
dimalvovs
opened
3 weeks ago
0
update spacemarkers container to use main
#33
dimalvovs
closed
3 weeks ago
0
split sample into more datasets
#32
dimalvovs
opened
1 month ago
0
24 multiqc
#31
dimalvovs
closed
1 month ago
0
28 multiple samples
#30
dimalvovs
closed
1 month ago
0
downsize TRANSCRIPTIONAL_PROGRAMS
#29
dimalvovs
opened
2 months ago
1
multiple samples
#28
dimalvovs
closed
1 month ago
1
24 multiqc
#27
dimalvovs
closed
1 month ago
1
refactor version collection
#26
dimalvovs
opened
2 months ago
0
GSEA
#25
dimalvovs
opened
2 months ago
0
multiqc
#24
dimalvovs
opened
3 months ago
1
automatic number of cell types
#23
dimalvovs
opened
3 months ago
0
expression profile in cirro
#22
dimalvovs
opened
3 months ago
0
9 add spacemarkers
#21
dimalvovs
closed
2 months ago
0
track modules
#20
dimalvovs
closed
1 month ago
0
Bump BayesTME
#19
jeffquinn-msk
closed
5 months ago
0
Bump BayesTME Version
#18
jeffquinn-msk
closed
5 months ago
0
Bump Bayestme
#17
jeffquinn-msk
closed
5 months ago
0
Fix STP Input Definitions
#16
jeffquinn-msk
closed
6 months ago
0
Dont Share Y Axis Scale for Rank Genes Plots
#15
jeffquinn-msk
closed
6 months ago
0
Fix Another Reader Edge Case
#14
jeffquinn-msk
closed
6 months ago
0
Handle Input Data Format Edge Case, Set Max Cpu to Reasonable Value
#13
jeffquinn-msk
closed
6 months ago
0
Bump BayesTME, Use Fast Spatial Regularizer
#12
jeffquinn-msk
closed
6 months ago
0
Fix Preproc Script
#11
jeffquinn-msk
closed
6 months ago
0
Add New STP Routine
#10
jeffquinn-msk
closed
6 months ago
0
add spacemarkers
#9
dimalvovs
closed
2 months ago
1
Make runnable in jhu
#8
dimalvovs
closed
6 months ago
0
Bump Bayestme Version
#7
jeffquinn-msk
closed
6 months ago
1
Fix "RuntimeError: dictionary changed size during iteration"
#6
jeffquinn-msk
closed
7 months ago
0
Add Cirro Configuration
#5
jeffquinn-msk
closed
7 months ago
0
Add Expression Profiles Samplesheet Column
#4
jeffquinn-msk
closed
7 months ago
1
Update BayesTME, Fix Readme
#3
jeffquinn-msk
closed
8 months ago
0
Minimal run example
#2
dimalvovs
opened
10 months ago
1
Initialize nf-core Template, Add BayesTME Module
#1
jeffquinn-msk
closed
1 year ago
4