breaks-software Candida-CRISPR-Target-Notebook issues

breaks-software / Candida-CRISPR-Target-Notebook

This Google Colab Notebook is intended to be used to speed the processing and identification of target gRNA sequences for introduction to Candida species via CRISPR techniques.

MIT License

0 stars 0 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Make a sound at the completion of the two longest steps

#12 breaks-software opened 2 years ago
0
As a user, in the "Collect the gene sequence" section I want to be able to paste a custom sequence or upload my own FASTA file instead of searching for it from the Candida Genome Database

#11 breaks-software closed 2 years ago
1
There is a new HDRinsertcontent field in the HDR repair Template parameters to include in the EuPaGDT request

#10 breaks-software closed 2 years ago
2
The Notebook is failing on the step submitting the request to EuPaGDT

#9 breaks-software closed 2 years ago
2
replace the centroid secondary structure diagram with the MFE secondary structure diagram

#8 breaks-software closed 2 years ago
2
download results to file name that starts with the EuPaGDT job name

#7 breaks-software closed 3 years ago
2
Allow optionally specifying the Subsequence string so that it can be used to create repair template.

#6 breaks-software closed 3 years ago
3
The very first step is failing after not using the notebook for quite some time...something about file not available

#5 breaks-software closed 3 years ago
2
handle the "The gene sequence you entered is less than 200bp..." dialog

#4 breaks-software closed 2 years ago
1
When I'm using the results of this workbook, I'll be taking my selected gRNA sequences into a different program. How can we make this go faster?

#3 breaks-software opened 4 years ago
1
as a user of the results, I need to be able to visually distinguish the gRNA sequence from the PAM and any added prefix

#2 breaks-software closed 4 years ago
1
as a user of this workbook, I need to be able to save the results for later processing

#1 breaks-software closed 4 years ago
2