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Candida-CRISPR-Target-Notebook
This Google Colab Notebook is intended to be used to speed the processing and identification of target gRNA sequences for introduction to Candida species via CRISPR techniques.
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Make a sound at the completion of the two longest steps
#12
breaks-software
opened
2 years ago
0
As a user, in the "Collect the gene sequence" section I want to be able to paste a custom sequence or upload my own FASTA file instead of searching for it from the Candida Genome Database
#11
breaks-software
closed
2 years ago
1
There is a new HDRinsertcontent field in the HDR repair Template parameters to include in the EuPaGDT request
#10
breaks-software
closed
2 years ago
2
The Notebook is failing on the step submitting the request to EuPaGDT
#9
breaks-software
closed
2 years ago
2
replace the centroid secondary structure diagram with the MFE secondary structure diagram
#8
breaks-software
closed
2 years ago
2
download results to file name that starts with the EuPaGDT job name
#7
breaks-software
closed
3 years ago
2
Allow optionally specifying the Subsequence string so that it can be used to create repair template.
#6
breaks-software
closed
3 years ago
3
The very first step is failing after not using the notebook for quite some time...something about file not available
#5
breaks-software
closed
3 years ago
2
handle the "The gene sequence you entered is less than 200bp..." dialog
#4
breaks-software
closed
2 years ago
1
When I'm using the results of this workbook, I'll be taking my selected gRNA sequences into a different program. How can we make this go faster?
#3
breaks-software
opened
4 years ago
1
as a user of the results, I need to be able to visually distinguish the gRNA sequence from the PAM and any added prefix
#2
breaks-software
closed
4 years ago
1
as a user of this workbook, I need to be able to save the results for later processing
#1
breaks-software
closed
4 years ago
2