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brentp
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geneimpacts
prioritize effects of variant annotations from VEP, SnpEff, et al.
MIT License
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geneimpacts not work
#26
Luciagenetic
opened
1 month ago
0
Modified effect.py to add new vep splice region annotations, accordin…
#25
oleraj
closed
3 months ago
4
unknown severity for effect 'splice_donor_region_variant'
#24
slulla
opened
6 months ago
1
change MEDIUM to MODERATE (SnpEff impact) in docs
#23
kew24
closed
1 year ago
1
unknown severity: splice_polypyrimidine_tract_variant & splice_donor_region_variant
#22
ToonRosseel
opened
1 year ago
1
Correct spelling mistakes
#21
EdwardBetts
closed
2 years ago
0
Switch from nose->pytest
#20
nileshpatra
closed
2 years ago
2
Fix SnpEff exonic property
#19
wm75
opened
4 years ago
8
Unknown severity: explanation?
#18
ilykos
opened
4 years ago
0
Please bump version 0.3.7!
#17
naumenko-sa
closed
5 years ago
3
adds ensembl_gene_id to fix https://github.com/quinlan-lab/vcf2db/issues/48
#16
naumenko-sa
closed
5 years ago
1
Return boolean for is_canonical rather than value of CANONICAL.
#15
roryk
closed
6 years ago
0
change canonical property to is_canonical to match the other properties
#14
roryk
closed
6 years ago
1
Add prioritizing effects by canonical status with VEP.
#13
roryk
closed
6 years ago
6
Support more dbNSFP fields annotated by VEP
#12
a113n
opened
7 years ago
0
snpEff: additional structural variant consequences
#11
chapmanb
closed
7 years ago
3
gene_fusion added as new impact from snpEff
#10
anastazie
closed
7 years ago
3
0.1.4: bidirectional_gene_fusion in snpEff 4.3
#9
chapmanb
closed
7 years ago
1
Support for new effect types in snpEff 4.3
#8
chapmanb
closed
7 years ago
1
snpEff: old EFF UNKNOWN and new ANN impact
#7
chapmanb
closed
8 years ago
3
Allow UNKNOWN for old style snpEff EFF annotations
#6
chapmanb
closed
8 years ago
1
Bump splice_region_variant to MED
#5
arq5x
closed
8 years ago
2
use HGVS.p for aa_change (ANN)
#4
bpow
closed
8 years ago
7
KeyError when using snpEff-annotated VCF with NextProt or Motif annotations
#3
bpow
closed
8 years ago
4
handle '+' events from snpEff more sanely
#2
brentp
closed
8 years ago
0
create within-class ordering
#1
brentp
closed
8 years ago
0