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broadinstitute
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pe2loaddata
Script to parse a Phenix metadata XML file and generate a .CSV for CellProfiler's loaddata module
BSD 2-Clause "Simplified" License
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Test index.xml
#33
sugan89
opened
1 month ago
0
v0.1.1 - not compatible with PE schema 'http://www.perkinelmer.com/PEHH/HarmonyV6'
#32
adamananos
opened
11 months ago
5
Fix paste command to support paths with spaces
#31
FrenkT
opened
1 year ago
0
Enable unsigned request when listing S3 bucket
#30
ErinWeisbart
opened
1 year ago
1
TypeError: 'NoneType' object is not subscriptable
#29
kboit
opened
2 years ago
1
Well names are badly named for 1536-well plates
#28
dlogan
opened
2 years ago
0
Ignore markdown in plain text
#27
dlogan
closed
2 years ago
0
fix console script entry, bump version
#26
bethac07
closed
2 years ago
1
ModuleNotFoundError
#25
dlogan
closed
2 years ago
1
PathName_* s incorrect
#24
ErinWeisbart
closed
2 years ago
4
Make it so it's an importable package, allow reading images from aws with boto3
#23
bethac07
closed
2 years ago
0
Not fully Windows compatible
#22
dlogan
opened
3 years ago
0
Proposed fix for os.makedirs error when output has no implied folder
#21
peterawe
closed
2 years ago
1
Automatically enforce PlateID value for the Metadata_Plate column
#20
pearlryder
opened
3 years ago
0
Substitutions
#19
bethac07
closed
3 years ago
0
Better differentiate the different ways to run
#18
bethac07
closed
3 years ago
0
Packaging
#17
shntnu
closed
3 years ago
8
Update Readme
#16
shntnu
closed
3 years ago
0
Move to Python3
#15
shntnu
opened
4 years ago
0
Simple Usage Guide
#14
jimmib78
opened
4 years ago
2
Make the illum filetype configurable
#13
bethac07
closed
5 years ago
2
Illum files are now .npy, not .mat
#12
bethac07
closed
5 years ago
4
Input list of files instead of listing directory
#11
shntnu
opened
5 years ago
0
Add parsing of PlaneID (version with fewer changes)
#10
shntnu
closed
6 years ago
2
Add parsing of PlaneID
#9
bethac07
closed
6 years ago
1
Handle case where you have multiple Z planes
#8
bethac07
closed
6 years ago
1
pe2loaddata fails if an image file is missing
#7
shntnu
closed
6 years ago
1
pe2loaddata fails if specified metadata doesn't exist
#6
shntnu
opened
7 years ago
0
Issues/4
#5
shntnu
closed
7 years ago
0
Parsing fails if channel is an int
#4
shntnu
closed
7 years ago
1
Working version
#3
shntnu
closed
8 years ago
0
Fixed various bugs
#2
shntnu
closed
8 years ago
1
Update README.md
#1
shntnu
closed
8 years ago
0