issues
search
broadinstitute
/
tensorqtl
Ultrafast GPU-enabled QTL mapper
BSD 3-Clause "New" or "Revised" License
162
stars
52
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
How to understand pval_nominal_threshold?
#118
Geneva0725
closed
10 months ago
3
handling of NaN in phenotype data in cis.map_cs
#117
hsun3163
closed
10 months ago
1
[help] genotype format
#116
CuteGold0407
closed
10 months ago
4
covariates issue
#115
CuteGold0407
closed
10 months ago
4
error of calculate_qvalues in post.py?
#113
lushjia
closed
10 months ago
1
Warning with rpy2 package
#112
lmsvaren
closed
10 months ago
7
how to get the beta value with cis_nominal mode
#111
zhoudreames
closed
1 year ago
3
Error - lengths must match to compare
#110
inabro
closed
1 year ago
2
RuntimeError: CUDA error: unknown error
#109
LuffyLouis
closed
3 months ago
3
Is TensorQTL computing a robust linear regression?
#108
ariadnacilleros
closed
1 year ago
2
Interaction QTL index error
#107
SolalC
closed
1 year ago
1
SyntaxError: invalid syntax
#106
arunhpatil
closed
10 months ago
2
NA value in phenotype data
#105
Geneva0725
closed
3 months ago
0
QTL interaction error
#104
yrjia1015
closed
1 year ago
1
Clarification for the transformation procedure.
#103
AlexSimis
closed
1 year ago
1
missing values in genotype
#102
al4225
closed
10 months ago
1
Discordant num_var between fastQTL and tensorQTL
#101
plantformatics
closed
1 year ago
5
No pval_nominal_threshold output from cis.map_cis()
#100
cldebban
closed
3 months ago
5
numpy float depreciation causing errors
#99
kimlorenz
closed
10 months ago
1
MAF vs Beta looks a bit unexpected
#98
maxozo
closed
10 months ago
2
broken link for Geuvadis example datasets
#97
arunhpatil
closed
1 year ago
1
way to specify technical or biological replicates?
#96
gpertea
closed
10 months ago
1
Results change when the covariates order change
#95
psytky03
closed
10 months ago
1
tensorqtl 1.0.8 not available on pip
#94
Jiacheng0007
closed
1 year ago
1
--paired_covariate support for cis_nominal
#93
jonathonl
closed
1 year ago
2
Question - genetic data from related
#92
dpelegri
closed
1 year ago
1
Limit the number of multi-threading
#91
anglixue
closed
3 months ago
1
Regression with phenotype containing 4 expressed genes
#90
Junjun-Xu
closed
1 year ago
3
TensorQTL for non-genomic data
#89
SynaSpike
closed
1 year ago
4
Allele frequency reported in nominal cis-mQTLs output
#88
ariadnacilleros
closed
1 year ago
1
NaN values in some mQTLs parquet file
#87
ariadnacilleros
opened
1 year ago
5
problematic variant
#86
guandailu
closed
3 months ago
1
TypeError of interaction mode when removing the command "--best-only"
#85
RL-m
closed
1 year ago
1
Cannot run cis.map_independent
#84
idinsmore1
closed
2 years ago
4
Can we use tensorqtl without a covariate?
#83
hhat
closed
2 years ago
1
TensorQTL load Plink2 files in command line
#82
alicewang19
closed
2 years ago
1
Output Documentation
#81
idinsmore1
closed
2 years ago
3
missing pval_nominal_threshold column in output cis_qtl.txt file
#80
jeoneunyoung
closed
2 years ago
3
nominal p value threshold for non-top eVariants in interaction mode
#79
tianwen0003
opened
2 years ago
0
Interaction mode: k variable overwrite in cis.py script (v1.0.7)
#78
KrotosBenjamin
closed
2 years ago
1
Reproduce GTEx v8
#77
Jiahao-Gao
closed
2 years ago
3
An error in tensorqtl_examples.ipynb ?
#76
taeyoungh
closed
2 years ago
1
How to use Plink2 files including multiallelic file
#75
kendaida
closed
2 years ago
2
Expected format for --interaction parameter
#74
kauralasoo
closed
8 months ago
3
pgenlib error
#73
blancvccf
closed
2 years ago
1
Which is the effect allele?
#72
ariadnacilleros
closed
2 years ago
3
TensorQTL analysis problem
#71
Juyeol-Jung
closed
3 months ago
7
sQTL analysis TSS
#70
rgarcia27
closed
1 year ago
1
v1.0.7 Docker container build fails
#69
kauralasoo
closed
2 years ago
3
TensorQTL for Methylation QTL analysis
#68
hsun3163
opened
2 years ago
1
Previous
Next