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cancerit
/
ascatNgs
Somatic copy number analysis using WGS paired end wholegenome sequencing
http://cancerit.github.io/ascatNgs/
GNU Affero General Public License v3.0
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Error "No such file or directory) Error parsing loci file line" when run ascat.pl
#120
yufanzhouonline
opened
3 months ago
0
Security vulnerabilities in the published container image
#119
verdurin
opened
1 year ago
0
Error: Expected ASCAT output file missing
#118
tanakash1028
opened
1 year ago
0
Is ascat.pl deterministic on multi-threaded systems?
#117
sclan
closed
2 years ago
5
Using ASCATngs in a tumour-only mode
#116
samhitapn
closed
2 years ago
3
Force output to generate ASPCF data
#115
tomvdbosch
opened
2 years ago
0
Error in implement_ascat: dim(X) must have a positive length
#114
imendes93
opened
2 years ago
1
typo in `-l` option
#113
keiranmraine
opened
3 years ago
0
ascat error
#112
sotaro-kanematsu
closed
3 years ago
1
GRCh38 Reference file to generate normal BAF values
#111
hannanw
closed
3 years ago
6
Resolution of segments called by ascatNGS
#110
hannanw
closed
3 years ago
4
getting unplaced contigs and decoy sequences in the copy number result
#109
anoronh4
closed
3 years ago
2
Usage example
#108
arpanda
closed
3 years ago
1
output documentation and annotating
#107
umasaxena
closed
3 years ago
1
Reference files for ascatNGS
#106
umasaxena
closed
3 years ago
5
ascat error inside of cgpwgs docker file
#105
leehs96
closed
3 years ago
6
Error during Installation via source code.
#104
as7a5
closed
3 years ago
1
Issue generating GC correction file
#103
dsampath31
closed
3 years ago
1
When building docker image ,come on a error
#102
yonglpy
closed
3 years ago
3
Feature/sex in counts
#101
keiranmraine
closed
4 years ago
0
Issue of Human reference files from 1000 genomes VCFs
#100
MimoriK
closed
4 years ago
1
ascat error occuring with creation of scratch dir
#99
anoronh4
opened
4 years ago
6
can ascatngs be used to Hybrid capture data?
#98
ghost
closed
3 years ago
0
Feature/ascat pca
#97
rulixxx
closed
4 years ago
0
quay.io version does not match program version
#96
GodloveD
closed
3 years ago
1
Copy number changes of ploidy-gain sample
#95
wanhui5867
closed
4 years ago
2
Feature/new docker
#94
rulixxx
closed
4 years ago
0
Disagreement between wiki and actual usage for ascatSnpPanelMerge
#93
cboursnell
opened
4 years ago
2
Problem generating SNPpositions for GRCh38
#92
WillieYu
opened
4 years ago
2
cannot found ascat.R file
#91
wanhui5867
closed
4 years ago
10
Error running ascat.pl?
#90
vymao
opened
4 years ago
0
Getting this information from scatngs
#89
beginner984
closed
4 years ago
1
Getting the ploidy of tumour
#88
beginner984
closed
5 years ago
1
Feature/docker
#87
rpshep
closed
5 years ago
0
Legacy PCAP referenced in setup.sh
#86
keiranmraine
opened
5 years ago
0
Whether ASCAT can be used in target sequencing data ?
#85
lidd77
closed
5 years ago
1
Getting prob number and segment mean from scatncg copynumber
#84
beginner984
opened
5 years ago
3
Purity and ploidy in CNV analysis
#83
beginner984
closed
5 years ago
3
A permanen error in running ascatNgs
#82
beginner984
closed
5 years ago
1
format of caveman.csv
#81
Tim0thy1
closed
4 years ago
6
error while running ascatngs
#80
gbnci
closed
5 years ago
4
hg38 Snp GC correction file
#79
Caninus23
closed
6 years ago
7
Error in calling ascat.GCcorrect
#78
Soniazumalave
closed
6 years ago
2
Feature/patch and upgrade ascat
#77
keiranmraine
closed
6 years ago
2
Add detail of anticipated minimum depth of genome for successful results
#76
keiranmraine
closed
6 years ago
1
Patch in unmerged ASCAT fix
#75
keiranmraine
closed
6 years ago
1
setup.sh alleleCount check gives wrong result
#74
ikirker
closed
6 years ago
2
setting gender to XY
#73
lmy06
closed
6 years ago
1
error about Genotype.pm not readable
#72
andromedia33
closed
7 years ago
0
Feature/new dense allele count
#71
ghost
closed
7 years ago
0
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