issues
search
cancerit
/
ascatNgs
Somatic copy number analysis using WGS paired end wholegenome sequencing
http://cancerit.github.io/ascatNgs/
GNU Affero General Public License v3.0
68
stars
17
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Error "No such file or directory) Error parsing loci file line" when run ascat.pl
#120
yufanzhouonline
opened
1 week ago
0
Security vulnerabilities in the published container image
#119
verdurin
opened
1 year ago
0
Error: Expected ASCAT output file missing
#118
tanakash1028
opened
1 year ago
0
Is ascat.pl deterministic on multi-threaded systems?
#117
sclan
closed
2 years ago
5
Using ASCATngs in a tumour-only mode
#116
samhitapn
closed
1 year ago
3
Force output to generate ASPCF data
#115
tomvdbosch
opened
2 years ago
0
Error in implement_ascat: dim(X) must have a positive length
#114
imendes93
opened
2 years ago
1
typo in `-l` option
#113
keiranmraine
opened
2 years ago
0
ascat error
#112
sotaro-kanematsu
closed
2 years ago
1
GRCh38 Reference file to generate normal BAF values
#111
hannanw
closed
2 years ago
6
Resolution of segments called by ascatNGS
#110
hannanw
closed
2 years ago
4
getting unplaced contigs and decoy sequences in the copy number result
#109
anoronh4
closed
2 years ago
2
Usage example
#108
arpanda
closed
3 years ago
1
output documentation and annotating
#107
umasaxena
closed
3 years ago
1
Reference files for ascatNGS
#106
umasaxena
closed
3 years ago
5
ascat error inside of cgpwgs docker file
#105
leehs96
closed
3 years ago
6
Error during Installation via source code.
#104
as7a5
closed
3 years ago
1
Issue generating GC correction file
#103
dsampath31
closed
3 years ago
1
When building docker image ,come on a error
#102
yonglpy
closed
2 years ago
3
Feature/sex in counts
#101
keiranmraine
closed
3 years ago
0
Issue of Human reference files from 1000 genomes VCFs
#100
MimoriK
closed
3 years ago
1
ascat error occuring with creation of scratch dir
#99
anoronh4
opened
3 years ago
6
can ascatngs be used to Hybrid capture data?
#98
ghost
closed
2 years ago
0
Feature/ascat pca
#97
rulixxx
closed
4 years ago
0
quay.io version does not match program version
#96
GodloveD
closed
2 years ago
1
Copy number changes of ploidy-gain sample
#95
wanhui5867
closed
4 years ago
2
Feature/new docker
#94
rulixxx
closed
4 years ago
0
Disagreement between wiki and actual usage for ascatSnpPanelMerge
#93
cboursnell
opened
4 years ago
2
Problem generating SNPpositions for GRCh38
#92
WillieYu
opened
4 years ago
2
cannot found ascat.R file
#91
wanhui5867
closed
4 years ago
10
Error running ascat.pl?
#90
vymao
opened
4 years ago
0
Getting this information from scatngs
#89
beginner984
closed
4 years ago
1
Getting the ploidy of tumour
#88
beginner984
closed
4 years ago
1
Feature/docker
#87
rpshep
closed
4 years ago
0
Legacy PCAP referenced in setup.sh
#86
keiranmraine
opened
4 years ago
0
Whether ASCAT can be used in target sequencing data ?
#85
lidd77
closed
5 years ago
1
Getting prob number and segment mean from scatncg copynumber
#84
beginner984
opened
5 years ago
3
Purity and ploidy in CNV analysis
#83
beginner984
closed
5 years ago
3
A permanen error in running ascatNgs
#82
beginner984
closed
5 years ago
1
format of caveman.csv
#81
Tim0thy1
closed
4 years ago
6
error while running ascatngs
#80
gbnci
closed
5 years ago
4
hg38 Snp GC correction file
#79
Caninus23
closed
6 years ago
7
Error in calling ascat.GCcorrect
#78
Soniazumalave
closed
6 years ago
2
Feature/patch and upgrade ascat
#77
keiranmraine
closed
6 years ago
2
Add detail of anticipated minimum depth of genome for successful results
#76
keiranmraine
closed
6 years ago
1
Patch in unmerged ASCAT fix
#75
keiranmraine
closed
6 years ago
1
setup.sh alleleCount check gives wrong result
#74
ikirker
closed
6 years ago
2
setting gender to XY
#73
lmy06
closed
6 years ago
1
error about Genotype.pm not readable
#72
andromedia33
closed
7 years ago
0
Feature/new dense allele count
#71
ghost
closed
7 years ago
0
Next