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carpentries-incubator
/
bioc-rnaseq
Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
https://carpentries-incubator.github.io/bioc-rnaseq
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Episode 2 & 3
#63
shbrief
closed
1 year ago
1
fix output errors, add details to DE model and contrast usage
#62
almutlue
closed
1 year ago
1
add packages to setup.md
#61
jokergoo
closed
1 year ago
1
changes during 7/19 meeting
#60
jdrnevich
closed
1 year ago
1
Update pre-req, suggestion bioc-intro lesson
#59
lgatto
closed
1 year ago
2
To Do before BioC2023 workshop
#58
jdrnevich
opened
1 year ago
3
add all required packages in the beginning of the episode
#57
jokergoo
closed
1 year ago
1
De analysis
#56
almutlue
closed
1 year ago
1
First attempt to add descriptions
#55
jdrnevich
closed
1 year ago
1
episode2 & 3
#54
shbrief
closed
1 year ago
2
Gene set enrichment analysis episode
#53
jokergoo
closed
1 year ago
6
Populate episodes 7 and 8
#52
csoneson
closed
1 year ago
1
Added intro text
#51
JennyZadeh
closed
1 year ago
1
Update 37 packages
#50
carpentries-bot
closed
1 year ago
1
Small changes to the landing page
#49
ghar1821
closed
1 year ago
2
Ep2 update question
#48
ghar1821
closed
1 year ago
1
Ep2 setup
#47
ghar1821
closed
1 year ago
3
updating workflows
#46
jdrnevich
closed
1 year ago
1
Manually update workflow files.
#45
zkamvar
closed
1 year ago
1
Update Episode 2: "RStudio Project and Experimental Data"
#44
ghar1821
closed
1 year ago
2
Not recognizing .Rmd files in episodes directory?
#43
jdrnevich
closed
1 year ago
5
Reorg
#42
jdrnevich
closed
1 year ago
1
Add RNA-seq quantification approaches.
#41
djhshih
closed
1 year ago
4
build locally with new env/deps
#40
lgatto
closed
1 year ago
3
paragraph introduction to the workshop
#39
jdrnevich
closed
1 year ago
1
Collapse 4-5 Intro/Set up sections into 3
#38
jdrnevich
closed
1 year ago
7
Update prerequisites
#37
cutsort
closed
1 year ago
2
test of adding text
#36
jdrnevich
closed
1 year ago
1
Update 01-introduction.Rmd
#35
jdrnevich
closed
1 year ago
1
Fix headings
#34
mblue9
closed
1 year ago
1
tried again to remove top-tier
#33
jdrnevich
closed
1 year ago
1
Learner
#32
jdrnevich
closed
1 year ago
1
add varnish fork for customisation
#31
mblue9
closed
1 year ago
1
Add installation info
#30
mblue9
closed
1 year ago
1
Add questions and key points from google doc
#29
csoneson
closed
1 year ago
7
Contributing to episode 08-gene-set-analysis
#28
csoneson
closed
1 year ago
4
Contributing to episode 07-differential-expression
#27
csoneson
closed
1 year ago
0
Contributing to episode 06-exploratory-qc
#26
csoneson
closed
1 year ago
0
Contributing to episode 05-import-annotate
#25
csoneson
closed
1 year ago
0
Contributing to episode 04-experimental-design
#24
csoneson
closed
1 year ago
1
Contributing to episode 03-setup
#23
csoneson
closed
1 year ago
1
Contributing to episode 02-intro-to-rnaseq
#22
csoneson
closed
1 year ago
0
Contributing to episode 01-introduction
#21
csoneson
closed
1 year ago
1
Renumber episodes according to discussion
#20
csoneson
closed
1 year ago
1
Update 02-intro-to-rnaseq.Rmd
#19
zchikwambi
closed
1 year ago
1
Update 03-experimental-design.Rmd
#18
zchikwambi
closed
1 year ago
1
Update 02-intro-to-rnaseq.Rmd
#17
zchikwambi
closed
1 year ago
3
Standard workflow for the "Introduction to RNA-seq" episode
#16
almeidasilvaf
opened
1 year ago
4
Transition to workbench
#15
csoneson
closed
1 year ago
11
Update website workflow
#14
csoneson
closed
1 year ago
0
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