centre-for-microbiome-research GroopM issues

centre-for-microbiome-research / GroopM

Metagenomic binning suite

GNU General Public License v3.0

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issues

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How do i install this?

#39 jvollme opened 2 years ago
1
OSError: Not a gzipped file (b'co')

#38 Huangpq2019 opened 3 years ago
0
GroopM error

#37 pbravakos opened 4 years ago
0
Problems installing GroopM

#36 lucaspompeun closed 4 years ago
2
Has the "recruiting" step been removed from groopm2?

#35 jvollme opened 5 years ago
0
GroopM2 ImportError: No module named tempdir

#34 kmin940 opened 6 years ago
6
Updated for PyTables 3 using pt2to3

#33 prehensilecode closed 6 years ago
0
With forked timbalam/GroopM: stream_ext module not found

#32 transcript opened 6 years ago
3
error while executing groopm command

#31 hites77 closed 6 years ago
1
Error with PyTables Dependency Still Causing Problems

#30 Roli-Wilhelm opened 6 years ago
2
Unexpected error: <type 'exceptions.FloatingPointError'> while running GroopM core

#29 bastian-wur opened 6 years ago
1
explicit versions pytables=3.1.1 & numexpr=2.3.1 required as dependencies

#28 jvollme opened 7 years ago
0
please provide release (tag)

#27 EricDeveaud opened 7 years ago
0
Error using groopm explore

#26 ghost opened 7 years ago
0
Error in creating the db.gm: "Distance matrix 'X' must be symmetric."

#25 BioAlgs opened 7 years ago
1
Installation and pytables

#24 linsalrob opened 8 years ago
1
groopm parse fails with "Distance matrix 'X' must be symmetric"

#23 fungs opened 8 years ago
13
GroopM parse issue: Random alignment retrieval only works for indexed files

#22 sturne29 opened 8 years ago
2
GroopM Core -stops

#21 maria-456 opened 8 years ago
3
Mnt remove pylab

#20 tacaswell closed 8 years ago
1
Error while using groopm core

#19 mchaib opened 8 years ago
5
Error with parsing groopM

#18 s1081289 opened 8 years ago
4
Error creating database

#17 ajcardenasb closed 9 years ago
0
Bump version number and scipy dependency.

#16 timbalam closed 9 years ago
1
Work around bug in numpy array construction for large arrays

#15 timbalam closed 9 years ago
0
update extract help

#14 wwood closed 9 years ago
1
negative dimensions error in groopm core

#13 koadman opened 9 years ago
7
Error in groopm parse

#12 bstamps closed 9 years ago
12
No file written when extracting reads from bin

#11 mdehollander closed 9 years ago
1
Plots in refinement step not popping up

#10 mdehollander closed 9 years ago
2
Error in reading in Bam files is groopm parse

#9 jenmobberley opened 9 years ago
1
IndexError while building database using groopm parse

#8 dburkhardt opened 9 years ago
12
Error upgrading groopM DB

#7 ctSkennerton opened 9 years ago
0
FNA > FA for bins?

#6 donovan-h-parks closed 9 years ago
1
extract does not accept a gzipped sequence file

#5 donovan-h-parks closed 9 years ago
2
groopm refine error

#4 igsbma closed 10 years ago
2
groopm core crashes with tables.exceptions.HDF5ExtError

#3 lmrodriguezr closed 10 years ago
3
groopm crash

#2 ewilbanks closed 10 years ago
4
groopm help should display version number

#1 wwood closed 10 years ago
0