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cnr-ibba
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nf-resequencing-mem
Nextflow resequencing pipeline with bwa-mem and freebayes
MIT License
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:bookmark: pipeline release v0.4.2
#29
bunop
closed
2 years ago
1
:zap: improve performance of coverage step
#28
bunop
closed
2 years ago
1
:zap: improve performance of coverage step
#27
bunop
closed
2 years ago
0
:sparkles: calculate coverage with custom module
#26
bunop
closed
2 years ago
1
:bookmark: pipeline release v0.4.1
#25
bunop
closed
2 years ago
1
:boom: launch freebayes on all samples
#24
bunop
closed
2 years ago
1
:sparkles: accept input data as samples data file
#23
bunop
closed
2 years ago
1
:bookmark: pipeline release v0.4.0
#22
bunop
closed
2 years ago
1
:arrow_up: upgrade modules to latest version
#21
bunop
closed
2 years ago
1
:arrow_up: upgrade modules to latest version
#20
bunop
closed
2 years ago
1
:bug: track sample names within pipeline
#19
bunop
closed
2 years ago
2
:bug: called VCFs have unknown samples
#18
bunop
closed
2 years ago
0
:sparkles: add a step for sample coverage
#17
bunop
closed
2 years ago
0
:wrench: add an option to export BAM files as results
#16
bunop
closed
2 years ago
0
:sparkles: accept input data as samples data file
#15
bunop
closed
2 years ago
0
:sparkles: deal with compressed genomes
#14
bunop
closed
2 years ago
0
:bookmark: pipeline release v0.3.0
#13
bunop
closed
2 years ago
3
:sparkles: Test in AWS environment
#12
bunop
closed
2 years ago
0
:boom: launch freebayes on all samples
#11
bunop
closed
2 years ago
0
:wrench: configure local resources like current nextflow pipelines
#10
bunop
closed
2 years ago
0
:sparkles: deal with CRAM aligments
#9
bunop
closed
6 months ago
3
:boom: restructure pipeline using the new template
#8
bunop
closed
2 years ago
0
:boom: restructure pipeline using the new template
#7
bunop
closed
2 years ago
0
:sparkles: test pipeline with PBS
#6
bunop
closed
3 years ago
0
:sparkles: Add missing steps to resequencing-mem pipeline
#5
bunop
closed
3 years ago
0
:arrow_up: upgrade pipeline modules
#4
bunop
closed
2 years ago
1
Test in PBS environment
#3
bunop
closed
3 years ago
1
:sparkles: Test in AWS environment
#2
bunop
closed
2 years ago
0
Add missing steps to resequencing-mem pipeline
#1
bunop
closed
3 years ago
0
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