cooperative-computing-lab makeflow-examples issues

cooperative-computing-lab / makeflow-examples

Example workflows for the Makeflow workflow system.

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issues

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Fix HECIL size and invocation.

#54 dthain closed 1 year ago
0
Update README.md

#53 JosephDuggan7 closed 1 year ago
0
sbatch: error: Batch script is empty!

#52 Kirito-Ma closed 2 years ago
22
Makeflow no response

#51 Kirito-Ma opened 2 years ago
1
Make HECIL example bigger.

#50 dthain closed 2 years ago
0
Update make_hecil_workflow

#49 andrewhennessee closed 2 years ago
0
Hecil update samtools install instructions

#48 btovar closed 2 years ago
0
Modifiy shebang in hecil to support python3

#47 sghuang19 closed 2 years ago
0
Resource_monitor operation reports an error

#46 zxclovezby closed 2 years ago
0
makeflow failed

#45 Kirito-Ma closed 2 years ago
14
sbatch error : unable to open file M

#44 Itachi-505 closed 2 years ago
26
failed with exit code 132

#43 stemangiola opened 3 years ago
2
fix sed addr from -1 to 1

#42 btovar closed 3 years ago
0
Problem in Create_SubsetPileup.sh

#41 balis closed 3 years ago
1
sge_submit_makeflow

#40 mlap-t opened 3 years ago
11
nested make flow

#39 mlap-t closed 3 years ago
11
is there a limit to the tree length? Some commands not executing despite similar ones are

#38 stemangiola opened 3 years ago
18
just a small idea: balance between light and heavy jobs

#37 stemangiola closed 4 years ago
4
Q: way to recover from new makefile (increased memory request) with existing files

#36 stemangiola closed 3 years ago
8
setting walltime for each command

#35 stemangiola closed 3 years ago
7
add missing brace

#34 btovar closed 4 years ago
0
Update JX examples to use template()

#33 tshaffe1 closed 2 years ago
0
mf,json,jx files annotated

#32 epyifany opened 5 years ago
0
Makeflow examples annotated

#31 epyifany closed 5 years ago
1
BWA-GATK Data Source

#30 nhazekam opened 5 years ago
3
Generate the example images from curated workflows

#29 tshaffe1 closed 2 years ago
0
Fixes reference to fastq_split.pl when fastq_reduce is needed

#28 nkremerh closed 6 years ago
0
Lifemapper Example

#27 tshaffe1 closed 5 years ago
16
SSAHA does not include fastq_split.pl

#26 nkremerh closed 6 years ago
2
Merge JX Args into Workflows

#25 dthain closed 6 years ago
0
JX Cleanup

#24 dthain closed 6 years ago
0
Cosmetic changes to Shakespeare example

#23 tshaffe1 closed 6 years ago
0
Problem Running Makeflow with Shakespeare on SGE

#22 npotteig closed 6 years ago
6
Removed redundant example and Added 2 simple, hello-world ones

#21 Nekel-Seyew closed 6 years ago
0
Adds Montage workflow example

#20 nkremerh opened 6 years ago
5
Added json to shakespeare example

#19 nhazekam closed 6 years ago
0
fixing typos

#18 AndrewLitteken closed 6 years ago
0
Adds Shakespeare text analysis example makeflow

#17 nkremerh closed 6 years ago
0
Update to args files and computed sizes

#16 nhazekam closed 6 years ago
0
Adding JX examples

#15 AndrewLitteken closed 6 years ago
3
Clean up workflow examples, add image.

#14 dthain closed 7 years ago
0
Adding my makeflow workflow maker

#13 Nekel-Seyew closed 7 years ago
1
Add JX examples

#12 tshaffe1 closed 7 years ago
0
Add amazon price calc

#11 cguccione closed 7 years ago
6
Add HECIL Makeflow example

#10 chowington closed 7 years ago
1
Adds instructions to download repository in readme pages

#9 nkremerh closed 7 years ago
0
Adds BWA-GATK content

#8 nkremerh closed 7 years ago
1
Updating BWA workflow

#7 cguccione closed 7 years ago
0
Updates to BWA

#6 cguccione closed 7 years ago
0
Fixed bug when counting sequences in fastq_reduce

#5 chowington closed 7 years ago
1