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cucapra
/
pollen
generating hardware accelerators for pangenomic graph queries
MIT License
24
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1
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FlatGFA Python bindings: support more container-like operations
#187
sampsyo
closed
1 month ago
0
Expand benchmarking infrastructure quite a bit
#186
sampsyo
closed
1 month ago
0
Tracker: FlatGFA benchmarks
#185
sampsyo
opened
1 month ago
0
Tracker: FlatGFA data structure optimization
#184
sampsyo
opened
1 month ago
0
Strings and equality for FlatGFA Python objects
#183
sampsyo
closed
1 month ago
0
Python types and expanded docs
#182
sampsyo
closed
1 month ago
0
Start docs for FlatGFA Python bindings
#181
sampsyo
closed
1 month ago
1
Try setting up CI for Python bindings tests
#180
sampsyo
closed
1 month ago
1
Tracker: FlatGFA Python bindings
#179
sampsyo
opened
1 month ago
1
Add tests for FlatGFA Python bindings
#178
sampsyo
closed
1 month ago
0
Lots more FlatGFA Python business
#177
sampsyo
closed
1 month ago
0
Python FlatGFA bindings: refactoring, expose Paths
#176
sampsyo
closed
1 month ago
0
Use newtypes for the arena types
#175
sampsyo
closed
1 month ago
0
Stronger types for indices
#174
sampsyo
closed
1 month ago
0
Simplify some arena types/traits
#173
sampsyo
closed
1 month ago
0
Set up CI for basic FlatGFA tests
#172
sampsyo
closed
1 month ago
1
Proof-of-concept Python bindings for FlatGFA
#171
sampsyo
closed
1 month ago
0
Benchmark conversion
#170
sampsyo
closed
2 months ago
0
Tidy `paths` command for blogpost
#169
anshumanmohan
closed
2 months ago
1
A new benchmarking tool
#168
sampsyo
closed
2 months ago
0
Rename and document FlatGFA
#167
sampsyo
closed
2 months ago
0
FlatGFA: Add an `odgi position -v` equivalent
#166
sampsyo
closed
2 months ago
0
FlatGFA: A prototype `odgi extract` reimplementation
#165
sampsyo
closed
2 months ago
0
Get mygfa ready for release
#164
sampsyo
closed
3 months ago
0
Modularize testing infrastructure and READMEs
#163
sampsyo
closed
3 months ago
0
Try installing stuff to a virtualenv
#162
sampsyo
closed
3 months ago
0
mygfa: A little bit of cleanup
#161
sampsyo
closed
3 months ago
0
FlatGFA: Subcommands
#160
sampsyo
closed
3 months ago
0
FlatGFA: Preprocess GFA files to estimate pre-allocation size
#159
sampsyo
closed
3 months ago
0
FlatGFA: Load the GFA text from a file directly
#158
sampsyo
closed
3 months ago
0
Use the `memchr` and `atoi` crates
#157
sampsyo
closed
3 months ago
0
FlatGFA: Pre-allocated writes
#156
sampsyo
closed
3 months ago
1
FlatGFA: Set up for in-place mutation
#155
sampsyo
closed
3 months ago
0
FlatGFA: Hand-rolled GFA parser
#154
sampsyo
closed
3 months ago
0
FlatGFA: Optimize GFA parsing a bit
#153
sampsyo
closed
3 months ago
0
polbin: Actually dump FlatGFA binary files
#152
sampsyo
closed
3 months ago
0
polbin: Finish loading binary files
#151
sampsyo
closed
3 months ago
0
A flattened binary format for GFAs
#150
sampsyo
closed
3 months ago
0
Slow odgi depth no paths
#149
sampsyo
closed
7 months ago
1
Divesting from odgi's Python bindings: documentation
#148
anshumanmohan
opened
7 months ago
0
Divesting from odgi's Python bindings: testing
#147
anshumanmohan
opened
7 months ago
0
Beyond `.og`: a zoo of data representations
#146
anshumanmohan
opened
7 months ago
1
restore handmade tests to their state immediately before the parser…
#145
susan-garry
closed
8 months ago
1
Restore some more deleted test files
#144
sampsyo
closed
8 months ago
0
Restore erroneously deleted tests
#143
sampsyo
closed
9 months ago
0
Try setting up CI
#142
sampsyo
closed
7 months ago
3
Record Updates Allow Arbitrary Expressions, Update Pollen Tests
#141
susan-garry
closed
9 months ago
2
Pollen supports array access
#140
susan-garry
closed
9 months ago
0
Revert "Pollen supports the array access postfix operator"
#139
susan-garry
closed
9 months ago
0
Pollen supports the array access postfix operator
#138
susan-garry
closed
9 months ago
0
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