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cucapra
/
pollen
generating hardware accelerators for pangenomic graph queries
MIT License
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`pollen_data_gen`: support for `subset_paths`
#137
anshumanmohan
closed
7 months ago
1
Parser
#136
susan-garry
closed
9 months ago
0
Currently unparseable parts of Pollen programs
#135
priyasrikumar
opened
11 months ago
3
Updated Pollen examples!
#134
priyasrikumar
closed
11 months ago
1
Correct flit install command in README
#133
priyasrikumar
closed
11 months ago
1
Tidy `parse_data`
#132
anshumanmohan
closed
11 months ago
0
Ask users to install odgi from source
#131
anshumanmohan
closed
11 months ago
0
Uniform test strategy: drop symlinks, use a long turnt file
#130
anshumanmohan
opened
11 months ago
0
`depth`: use `pollen_data_gen` in place of `parse_data`
#129
anshumanmohan
closed
7 months ago
0
Dangling file `process.py`?
#128
anshumanmohan
opened
11 months ago
0
Most foolproof way to install odgi?
#127
anshumanmohan
closed
11 months ago
2
Make README point to Docker as the first resource
#126
anshumanmohan
closed
11 months ago
0
More complete Dockerfile
#125
anshumanmohan
closed
11 months ago
0
`mygfa` doesn't parse optional CIGAR strings
#124
susan-garry
opened
11 months ago
3
Small `slow-odgi` testing fixes, hopefully to fix #119
#123
sampsyo
closed
11 months ago
3
Straight-line Calyx installation instructions
#122
anshumanmohan
closed
11 months ago
0
Nix invalid graphs when running `make clean`
#121
anshumanmohan
closed
11 months ago
0
Update README.md
#120
susan-garry
closed
11 months ago
1
Some `slow-odgi` tests failing
#119
anshumanmohan
closed
11 months ago
6
Remove duplicate depth directory in `pollen_py`
#118
susan-garry
closed
11 months ago
2
Use Pollen Logo with Transparent Background in README
#117
susan-garry
closed
11 months ago
0
Stop using odgi's Python bindings in `calyx_depth.py`
#116
anshumanmohan
closed
7 months ago
8
Gitignore .flatten.fasta
#115
anshumanmohan
closed
11 months ago
0
Depth instructions don't work as written
#114
anshumanmohan
closed
11 months ago
4
Collapse make targets for testing
#113
sampsyo
closed
11 months ago
0
Use a new Turnt feature to simplify validate tests
#112
sampsyo
closed
12 months ago
1
Simplify and parallelize test execution
#111
sampsyo
closed
12 months ago
0
Expose the remaining slow_odgi test utilities as subcommands
#110
sampsyo
closed
12 months ago
0
Use `slow_odgi`'s `paths` subcommand consistently
#109
anshumanmohan
closed
12 months ago
0
Expose slow_odgi's normalization in a new subcommand
#108
sampsyo
closed
12 months ago
2
`calyx_depth.py`: divest from odgi's Python bindings
#107
anshumanmohan
opened
1 year ago
1
`calyx_depth.py`: lighten notation by using Calyx eDSL
#106
anshumanmohan
opened
1 year ago
0
`calyx_depth.py`: use the eDSL, stop using odgi's Python bindings
#105
anshumanmohan
opened
1 year ago
4
`pollen_data_gen`: go all the way to binary?
#104
anshumanmohan
opened
1 year ago
0
Update installation instructions
#103
anshumanmohan
closed
11 months ago
5
Expand `pollen_data_gen simple`
#102
anshumanmohan
closed
1 year ago
0
Make a new dataclass `Strand`
#101
anshumanmohan
closed
1 year ago
0
`slow-odgi`: `extract`
#100
anshumanmohan
opened
1 year ago
0
`data_gen`: minor tidying
#99
anshumanmohan
closed
1 year ago
0
Error when generating a node depth accelerator using `exine depth`
#98
tonyjie
closed
11 months ago
6
`pollen_data_gen`: Lift precompute
#97
anshumanmohan
closed
1 year ago
1
`pollen_data_gen`: expand `simple`
#96
anshumanmohan
closed
1 year ago
1
Tweaks to READMEs to clarify slow_odgi installation. Closes #94
#95
anshumanmohan
closed
1 year ago
0
Issues in README
#94
anshumanmohan
closed
1 year ago
0
Examples of Pollen
#93
anshumanmohan
closed
11 months ago
2
Just some more types
#92
sampsyo
closed
1 year ago
6
Appease MyPy
#91
anshumanmohan
closed
1 year ago
0
Redundancies in `pollen-py`?
#90
anshumanmohan
closed
11 months ago
2
Rename pollen-py into pollen_py
#89
anshumanmohan
closed
1 year ago
0
Black pass
#88
anshumanmohan
closed
1 year ago
1
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