issues
search
cucapra
/
pollen
generating hardware accelerators for pangenomic graph queries
MIT License
24
stars
1
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
`slow_odgi`: proofs
#87
anshumanmohan
closed
1 year ago
3
README is stale
#86
anshumanmohan
closed
1 year ago
2
Proofs about our commands
#85
anshumanmohan
opened
1 year ago
1
Fix inject
#84
anshumanmohan
closed
1 year ago
0
Monorepo
#83
anshumanmohan
closed
1 year ago
2
Add MIT license to Pollen
#82
anshumanmohan
closed
1 year ago
1
`odgi validate` crashing on large graphs
#81
anshumanmohan
closed
1 year ago
3
Cigar overlaps in paths
#80
anshumanmohan
closed
1 year ago
1
Minimize imports in slow-odgi
#78
anshumanmohan
closed
1 year ago
0
Fix overlap
#77
anshumanmohan
closed
1 year ago
0
Depth of a subset of paths
#76
anshumanmohan
closed
1 year ago
1
`odgi` source confusion
#74
anshumanmohan
opened
1 year ago
2
`slow-odgi`: investigate why we disagree on `inject`
#73
anshumanmohan
closed
1 year ago
0
`slow-odgi`: better benchmarking
#72
anshumanmohan
opened
1 year ago
0
`slow-odgi`: CIGAR string overlaps
#71
anshumanmohan
closed
1 year ago
0
json-gen: Adjustable widths
#70
anshumanmohan
closed
1 year ago
0
Reorganize json-gen and slow-odgi into two packages
#69
anshumanmohan
closed
1 year ago
2
slow-odgi: CLI
#68
anshumanmohan
closed
1 year ago
10
Add small CLI
#67
anshumanmohan
closed
1 year ago
0
Basic bench
#66
anshumanmohan
closed
1 year ago
3
slow-odgi: Extremely basic benchmarking
#65
anshumanmohan
closed
1 year ago
1
The need for `Set`
#64
anshumanmohan
closed
1 year ago
5
Slow odgi doc
#61
anshumanmohan
closed
1 year ago
0
`slow-odgi` documentation
#60
anshumanmohan
closed
1 year ago
0
Btmg redux
#59
anshumanmohan
closed
1 year ago
1
Benefit of `Emit` Statements
#58
susan-garry
closed
1 year ago
4
`Emit` Statement Ambiguity
#57
susan-garry
closed
1 year ago
17
slow-odgi: more thoughtful generation of segment names
#54
anshumanmohan
closed
1 year ago
3
Set up CI
#53
sampsyo
closed
7 months ago
9
Fixes in `slow-odgi flip`
#52
anshumanmohan
closed
1 year ago
2
`slow-odgi inject`
#51
anshumanmohan
closed
1 year ago
6
Better testing, more graphs
#50
anshumanmohan
closed
1 year ago
3
add chr6.C4 to test-files
#49
anshumanmohan
closed
1 year ago
1
Refactor slow-odgi
#48
anshumanmohan
closed
1 year ago
0
Use turnt return_code for cleanup
#47
anshumanmohan
closed
1 year ago
1
`slow-odgi 0.n`
#46
anshumanmohan
opened
1 year ago
0
Catch flip up to new Handle stuff
#45
anshumanmohan
closed
1 year ago
0
Make test strategy uniform
#44
anshumanmohan
closed
1 year ago
1
use separate turnt outputs to reduce clobbering. closes #34
#43
anshumanmohan
closed
1 year ago
3
A little file manipulation to avoid clobbering gfa files
#42
anshumanmohan
closed
1 year ago
3
Rename SegO
#41
anshumanmohan
closed
1 year ago
0
Use SegO to define Link
#40
anshumanmohan
closed
1 year ago
0
Use @dataclass magic to hash SegO
#39
sampsyo
closed
1 year ago
1
Parser
#38
susan-garry
closed
1 year ago
7
Slow odgi paths
#37
anshumanmohan
closed
1 year ago
0
slow-odgi: tidying
#36
anshumanmohan
closed
1 year ago
1
Simplify sorted output of links
#35
sampsyo
closed
1 year ago
3
Use separate outputs in Turnt test environments
#34
sampsyo
closed
1 year ago
0
slow-odgi: Make a little top-level CLI
#33
sampsyo
closed
1 year ago
1
slow-odgi: points of divergence and confusion
#32
anshumanmohan
closed
1 year ago
6
Previous
Next