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cucapra
/
pollen
generating hardware accelerators for pangenomic graph queries
MIT License
24
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1
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slow-odgi: Make a little top-level CLI
#33
sampsyo
closed
1 year ago
1
slow-odgi: points of divergence and confusion
#32
anshumanmohan
closed
1 year ago
6
Slow odgi: `overlap`
#31
anshumanmohan
closed
1 year ago
4
Slow odgi: `flatten`
#30
anshumanmohan
closed
1 year ago
1
Slow odgi edgy
#29
anshumanmohan
closed
1 year ago
6
New Pollen Type for DNA Bases
#28
susan-garry
closed
1 year ago
3
Better testing infrastructure for slow-odgi
#27
anshumanmohan
closed
1 year ago
6
Normalize GFAs?
#26
anshumanmohan
closed
1 year ago
2
Generate Calyx-friendly JSON
#25
anshumanmohan
closed
1 year ago
5
Possibly verbose behavior in our .data files
#24
anshumanmohan
closed
1 year ago
3
slow_odgi: think about `depth.uniq` and other such variants that require `subset_paths`
#23
anshumanmohan
closed
1 year ago
0
A minor expansion of mygfa to compute node_steps
#22
anshumanmohan
closed
1 year ago
1
mygfa: Parse CIGAR alignment strings
#21
sampsyo
closed
1 year ago
1
Try out a minimal GFA text format parser
#20
sampsyo
closed
1 year ago
0
Depth refactor
#19
susan-garry
closed
1 year ago
0
Test refactor
#18
susan-garry
closed
1 year ago
4
Bug fixes
#17
susan-garry
closed
1 year ago
1
Add flit
#16
susan-garry
closed
1 year ago
3
Update readme
#14
anshumanmohan
closed
1 year ago
0
Add pollen icon to readme
#13
anshumanmohan
closed
1 year ago
0
node depth parses the new calyx interpreter output correctly
#12
susan-garry
closed
1 year ago
0
Work on Docker image
#11
anshumanmohan
closed
1 year ago
5
Update README.md
#10
susan-garry
closed
1 year ago
1
Swap connect args
#9
susan-garry
closed
1 year ago
0
Calyx node depth general
#8
susan-garry
closed
1 year ago
0
Node depth algorithm for a single node
#7
susan-garry
closed
1 year ago
0
Testing setup
#6
susan-garry
closed
1 year ago
0
Dahlia implementation
#5
susan-garry
closed
2 years ago
0
Depth with file
#4
dc854
closed
2 years ago
0
Testing Framework
#3
evanmwilliams
closed
2 years ago
0
Clean up data situation
#2
sampsyo
closed
2 years ago
0
Depth implementation
#1
dc854
closed
2 years ago
2
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