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dariober
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cnv_facets
Somatic copy variant caller (CNV) for next generation sequencing
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Using other reference genome builds
#62
mhSepehri
opened
1 day ago
1
Issue after installing with conda
#61
danielt86
opened
4 days ago
3
Warning message: region "1" specifies an unknown reference name. Continue anyway.
#60
thebrownlife
opened
5 months ago
4
Why are the results of all samples like this: ploidy=2.00; purity=NA?
#59
h170607
closed
1 year ago
1
Which vcf file should be used?
#58
h170607
closed
1 year ago
1
Error in 1:nchr : result would be too long a vector
#57
jeffchen2000
opened
1 year ago
2
Do I need to set "--target" option for exome data?
#56
jeffchen2000
closed
1 year ago
1
issue installing cnv_facets using conda
#55
dalalsult
opened
1 year ago
6
question about ploidy estimate
#54
guillaume-rs
closed
1 year ago
2
difference between LOH and DUP-LOH
#53
guillaume-rs
closed
1 year ago
2
How to generate Gistic2.0 input data from cnv_facets output
#52
LileeGao
opened
1 year ago
4
Tabular output from `cnv_facets`
#51
Faizal-Eeman
closed
1 year ago
1
--min-read-counts hardcoded to 0,0 instead of 25,0 as recommended by FACETS manual
#50
bozbezbozzel
closed
2 years ago
2
Not able to install cnv_facets on my Mac system and on BioHPC
#49
akhileshmishra0908
opened
2 years ago
0
when input bam , nedd to remove or mark duplicates filres?
#48
YangLeng90
closed
2 years ago
1
purity=NA
#47
stroke1989
opened
2 years ago
1
error in evaluating the argument 'con' in selecting a method for function 'isOpen': TabixFile: file(s) do not exist:
#46
asmlgkj
closed
2 years ago
4
have no records
#45
stroke1989
closed
2 years ago
5
Issue with facets execution
#44
nsoriano2
opened
2 years ago
7
Annotate facets output
#43
tstokowy
opened
2 years ago
0
Cluster execution halted error with "parallel" in R 4.1.0 version on RHEL8 machine.
#42
shivak3
closed
2 years ago
7
chromosome name
#41
sotaro-kanematsu
closed
2 years ago
1
WGS recommendations for chromothripsis analysis
#40
ahwanpandey
opened
3 years ago
0
conda install not working
#39
lydiayliu
closed
3 years ago
1
Fonts missing? Incorrect plotting of png file.
#38
tstokowy
opened
3 years ago
12
Issues with install dependencies
#37
umasaxena
opened
3 years ago
2
Clarification on segment start value
#36
vymao
closed
3 years ago
1
install cnv_facets 0.16.0 with r-facets 0.6.1 using anaconda3
#35
jh2663
opened
3 years ago
1
Segmentation values for targeted panels?
#34
vymao
closed
3 years ago
3
R dependency issue
#33
vymao
opened
3 years ago
3
vcf file
#32
sotaro-kanematsu
closed
3 years ago
1
Update facets v0.5.14 to v0.6.1
#31
ckandoth
opened
3 years ago
1
conda cnv_Facets does nbot work
#30
worker000000
closed
3 years ago
1
The start position of the ouput vcf
#29
YingYa
opened
3 years ago
0
Can I force the ploidy to a specific value (experimentally validated) in facets?
#28
Francesc-Muyas
opened
4 years ago
0
log-odds-ratio threshold for LOH
#27
ahwanpandey
opened
4 years ago
0
Cannot allocate memory error
#26
alhafidzhamdan
opened
4 years ago
1
mkfifo: cannot create fifo...
#25
mizunokei
opened
4 years ago
12
CRAM format support?
#24
YingYa
opened
4 years ago
0
--snp-vcf option
#23
viancheng
closed
4 years ago
1
v c f
#22
xiucz
closed
4 years ago
1
LCN_EM=. ?
#21
wclee47
closed
4 years ago
1
Pooled multiple controls bam files together ?
#20
npatel22526
closed
6 months ago
4
Skip plot_coverage function [Feature request]
#19
PubuduSaneth
closed
4 years ago
6
Biocontainers cnv_facets docker images - not functional
#18
PubuduSaneth
closed
4 years ago
2
Clarification concerning CF_EM info tag
#17
PubuduSaneth
closed
4 years ago
2
Germline CNV calling?
#16
xysj1989
closed
4 years ago
1
Running cnv_facets for tumor samples that don't have normal counterpart samples
#15
LeiG1103
closed
4 years ago
1
libcrypto.so.1.0.0 error in cnv_facets.
#14
wangxlab
closed
4 years ago
4
Run SNP-pileup only [Feature Request]
#13
not-rs
opened
5 years ago
1
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