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databio
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bedboss
Python pipeline for processing BED files for BEDbase
https://docs.bedbase.org
BSD 2-Clause "Simplified" License
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Speed improvements
#85
khoroshevskyi
opened
2 days ago
0
Bug in bedbuncher
#84
khoroshevskyi
opened
2 days ago
0
Improve reindexing
#83
khoroshevskyi
opened
2 days ago
0
check bed classifier
#82
khoroshevskyi
opened
3 days ago
0
Add validate config to bedboss
#81
khoroshevskyi
opened
3 weeks ago
0
Add Rservice
#80
nsheff
opened
1 month ago
0
Failing pipeline.
#79
khoroshevskyi
opened
1 month ago
0
speed up bedboss / bedboss profiling
#78
khoroshevskyi
opened
1 month ago
0
Ref validator refactoring
#77
donaldcampbelljr
closed
1 month ago
0
Release 0.4.1
#76
khoroshevskyi
closed
1 month ago
1
Added new metadata model
#75
khoroshevskyi
closed
1 month ago
0
Dev ref genome validator
#74
nsheff
closed
1 month ago
0
Release 0.4.0
#73
khoroshevskyi
closed
2 months ago
0
added bbuploader
#71
khoroshevskyi
closed
2 months ago
0
New line character at the end of https://api.bedbase.org/openapi.json
#70
jwokaty
opened
2 months ago
0
Next steps
#69
khoroshevskyi
closed
1 month ago
1
Avoiding 403s
#68
jwokaty
closed
2 months ago
1
Dev bedclassifier script
#67
donaldcampbelljr
closed
5 months ago
2
Add license field to uploading bed files
#66
khoroshevskyi
closed
2 months ago
1
Add uploading bed tokens
#65
khoroshevskyi
closed
2 months ago
1
Add function for uploading bed tokens
#64
khoroshevskyi
closed
2 months ago
1
release 0.3.0
#63
khoroshevskyi
closed
2 months ago
0
Should we standardize bed files?
#62
khoroshevskyi
opened
6 months ago
2
Release 0.2.1
#61
khoroshevskyi
closed
6 months ago
0
Improve BED Classifier
#60
donaldcampbelljr
opened
6 months ago
2
Where should metadata live?
#58
khoroshevskyi
opened
7 months ago
1
v0.2.0
#57
khoroshevskyi
closed
7 months ago
0
New bbconf
#56
khoroshevskyi
closed
7 months ago
0
bedset - create new statistics and metadata
#55
khoroshevskyi
opened
7 months ago
0
Update cli
#53
khoroshevskyi
closed
7 months ago
1
Bed cache
#52
khoroshevskyi
closed
7 months ago
0
Update qdrant
#51
khoroshevskyi
closed
7 months ago
2
Update bedset
#50
khoroshevskyi
closed
7 months ago
1
Add S3 upload check if file exists in the bucket
#49
khoroshevskyi
closed
7 months ago
1
integrate populator repository
#72
nsheff
closed
2 months ago
2
Clean bedstat
#46
khoroshevskyi
closed
7 months ago
0
Update README.md
#45
khoroshevskyi
closed
8 months ago
0
Restructuring
#44
khoroshevskyi
closed
8 months ago
0
Check if bedboss is producing correct digest
#43
khoroshevskyi
closed
7 months ago
1
improve bedqc error raising
#42
khoroshevskyi
closed
8 months ago
0
clean up CLI of bedboss
#41
khoroshevskyi
closed
8 months ago
0
Restructuring
#40
khoroshevskyi
closed
8 months ago
0
Update bed classifier
#39
donaldcampbelljr
closed
8 months ago
1
Bed files and statistics should be named according to their digest.
#38
khoroshevskyi
closed
7 months ago
1
regionstat.R should be more verbose if it cannot find the BSGenome package used for calculating and plotting GC content
#37
donaldcampbelljr
opened
8 months ago
1
bedboss should use bbclient!
#36
khoroshevskyi
closed
7 months ago
2
Add Bed Classifier
#35
donaldcampbelljr
closed
8 months ago
1
Allow uploading meta data from input pep to an output pep via registry path
#33
donaldcampbelljr
closed
8 months ago
1
Use pephubclient to create new bedset, as View
#32
khoroshevskyi
closed
8 months ago
0
Use pephubclient to upload bed metadata as PEP sample
#31
khoroshevskyi
closed
8 months ago
4
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