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OrthoEvolution
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
https://orthoevolution.readthedocs.io/en/master/
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Consider moving the Manager/config directory to a higher level parent.
#150
grabear
opened
5 years ago
0
Attribute Configuration Error
#149
sdhutchins
closed
5 years ago
10
Rework the SGE module.
#148
grabear
closed
4 years ago
9
Implement taxid-based blastn (#147)
#147
sdhutchins
closed
5 years ago
7
Light refactoring of database management patch
#146
sdhutchins
closed
5 years ago
2
Completion of working DatabaseManagement.
#145
grabear
closed
5 years ago
0
WIP Merge Utilities Branch to DB_Mana_Patch
#144
grabear
closed
5 years ago
0
New/Alternative Blast Workflow
#143
grabear
closed
5 years ago
6
Created Readthedocs Yaml Configuration
#142
sdhutchins
closed
5 years ago
0
Update dev-master to master
#141
sdhutchins
closed
6 years ago
0
Update tablib version
#140
sdhutchins
closed
6 years ago
0
Add granular installation of various tools/toolsets.
#139
grabear
closed
5 years ago
2
Updated package requirements and index.html
#138
sdhutchins
closed
6 years ago
1
Reformatted pal2nal.py and updated index.html
#137
sdhutchins
closed
6 years ago
1
Create PULL_REQUEST_TEMPLATE.md
#136
sdhutchins
closed
6 years ago
0
Add markdown for PyPi
#135
grabear
opened
6 years ago
1
Implement better logging and notification.
#134
grabear
closed
4 years ago
2
Create an Icon or Image for the package.
#133
grabear
opened
6 years ago
10
Updated docstrings and documentation
#132
sdhutchins
closed
6 years ago
2
Test IFTT pull request.
#131
grabear
closed
6 years ago
1
Update dev-master to master
#130
sdhutchins
closed
6 years ago
0
Quick fixes to update docs and modules
#129
sdhutchins
closed
6 years ago
4
Merge Dev-Master into Master
#128
grabear
closed
6 years ago
1
Refactored Tools, Orthologs and Pipeline modules
#127
sdhutchins
closed
6 years ago
0
First refactor commit to `OrthoEvol`
#126
sdhutchins
closed
6 years ago
1
Merge database-patch into dev-master.
#125
grabear
closed
6 years ago
1
Further Improvement of Blast and SGE classes
#124
sdhutchins
closed
6 years ago
1
Update ReadTheDocs
#123
sdhutchins
closed
6 years ago
4
Deciding on DocString style
#122
sdhutchins
closed
6 years ago
5
Updated index.html
#121
sdhutchins
closed
6 years ago
1
Improved sge module and updated Blast module
#120
sdhutchins
closed
6 years ago
1
Merge database-patch into dev-master.
#119
grabear
closed
6 years ago
0
Using YAML tags and Python types with PyYAML.
#118
grabear
closed
5 years ago
2
Update create-sge-job-patch with edits to Blast and FTP
#117
sdhutchins
closed
6 years ago
0
Update database-patch with windowmasker features
#116
sdhutchins
closed
6 years ago
1
GI deprecation
#115
grabear
closed
6 years ago
5
Convert StreamIEO class to LogIT class method.
#114
grabear
closed
5 years ago
2
Speeding up BLAST (Phasing out GI numbers)
#113
grabear
closed
6 years ago
4
Update index.html
#112
sdhutchins
closed
6 years ago
0
Update readthedocs, wiki, and READMEs
#111
sdhutchins
opened
6 years ago
8
Merge sge-patch into dev-master
#110
sdhutchins
closed
6 years ago
0
Updated subtitles.
#109
grabear
closed
6 years ago
0
Merge docstring_branch with dev-master
#108
grabear
closed
6 years ago
0
Merge dev-master into doc_string_branch.
#107
grabear
closed
6 years ago
0
Re-address the current ways that the various Orthologs modules handle the data/databases.
#106
grabear
opened
6 years ago
1
Add better functionality to the Tier system used by the Accession file.
#105
grabear
opened
6 years ago
0
Test or Rewrite Send2Server module
#104
sdhutchins
closed
4 years ago
4
Hot Fix: Added function to download .gbff databases
#103
sdhutchins
closed
6 years ago
4
Agree on a line length for our package.
#102
grabear
closed
6 years ago
8
Ortholog config patch
#101
grabear
closed
6 years ago
0
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